BAC Information

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BAC

Clone NameB6Ng01-318C01
Chromosome15 (Build37)
Map Location 49,480,717 - 49,481,811
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600, LOC100039539
Downstream geneLOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318C01.bB6Ng01-318C01.g
ACCGA108094GA108095
length1,0971,156
definitionB6Ng01-318C01.b B6Ng01-318C01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacacatgctatatattaagggccagatattttttgccttttct
aatgaaaattgtgaaaattatcttgtatgtcattttaaaatacctcaaaa
ataaaaatggctccatgtgcaaatgccaagcctaattatctgagtttcat
cttcagtattcatgtaaactcatcaatgagtaatctaaccactatggtaa
atgtacaacatcacacaaacatttattattggtacaatagtggtacatga
tatggtagtagtccactagtttttgcttggatttaggcccacttatgaaa
aggaatacttagatggtactactaaaatggacaagatccaagactaccta
tatcatgtatttaggagaaacagaatactgtaattgttctaaagggatat
agcaataaaatgactcctaatgacatcttgctgcatcctaataaaagaac
cttgtttttgtagtagataggaattagaagatactcaaggtctataatgt
acaaagagtgagcactcagccataaatgtggtaattattaagcctgctcc
tcttcaaggctaagggatcaaaaaagaagaggaggaagaaagattctaag
aaccagaagtgggtgaagactctgagaaaaatagatgacacataagaatt
cacaagacatgcacagatcctagccatacagggtctcagcacttaaagca
ggtagacctagggtctaattattaccatgaagctgcttgtaattgatagc
tgctgagaagtttttctgaagtagacacatgagaggatgctttgcagaag
cagatacttgagaggacacatgatgtttggaaagaatataagtataaccc
aacagacagtgaacaatgcttttgtattggtatgccttgaagtgctttgc
aggcctttgcttgccatgacttcatagagagaaaaggacgaagacttcat
gtagtattctggatgcagattgccacttctctagaccctagtcattaggg
taactcttatttatcatatactaaacaatattgttcttgctgacctcttt
atataaatgtaacaaaatatttttatttagattttttatttagaaga
gaattcatcccatatgcagccaccaaacccagtcactattgctgatacta
aaaagtgcttgctgacaggagcctgatatgaatgtctcctgagaggctct
gccagagccttacctatagagatgcatatgcttgcagcaaccatctaact
gaggaccaagaccacaatggaggagttaggtgaaggactgaaggagctga
aggggtttgcaaccctatagggaaaacaacaatatcaactaaccagaccc
tccctcccccagagttcccagggactaaaccacaaaccaaagaacaagaa
tggtgggacccatagctccaggtgcatatgtagcagaggctggccctatc
tggcatcaatgggagtggaggcccttggtcctgtgaagacttgatgccct
gtcgtaggagaatacaaggtcggtaaggcaggaatgagtgggtggttgag
agagcacctttatagaagcaggggagagaggtagaataggtggctcttgg
agggggaaaaaggaaggaggataacatttgaaatgtaaataaataaataa
ccaataaaaaaattaaaaaagaaagaaaccttggaaatattctgtagcca
aagcatgagtgcaaagagacattcttttctctctaatcagctacaactat
ccaaactgacagctcctagtataagaattttgggggaatttgaacaaatc
tccagtaagatgcaaaagcagcttcactcaactgcaatctaaatggaaag
aatttatgcttaaagaaaatggtgctatgtattaaccagttttaaagctt
ttgaagttgaacacacaacccacatccttctaaattttggggacatttgt
tttgacagacaggattttcttcacaaaaaaattggagaagtacaatttgg
atgatagtcaaatactataatatacaatttaatagagcttatattttatc
agatgagtgcaactctccaaaatggtattaaatattgaaaaattgaaaaa
tctgtctttcccctaatagcaaacctttttattttacaaaagggaatcta
gaatccaatatgaagaattgccatgcttagtcaaattttctcctttcctt
ttgcaatatgggggcaccagagacgattttctttatgcaatccttaagtc
ggtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49480717_49481811
seq2: B6Ng01-318C01.b_44_1140

seq1  GAATTCTACACATGCTATATATTAAGGGCCAGATATTTTTTGCCTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACATGCTATATATTAAGGGCCAGATATTTTTTGCCTTTTCT  50

seq1  AATGAAAATTGTGAAAATTATCTTGTATGTCATTTTAAAATACCTCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATTGTGAAAATTATCTTGTATGTCATTTTAAAATACCTCAAAA  100

seq1  ATAAAAATGGCTCCATGTGCAAATGCCAAGCCTAATTATCTGAGTTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGGCTCCATGTGCAAATGCCAAGCCTAATTATCTGAGTTTCAT  150

seq1  CTTCAGTATTCATGTAAACTCATCAATGAGTAATCTAACCACTATGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTATTCATGTAAACTCATCAATGAGTAATCTAACCACTATGGTAA  200

seq1  ATGTACAACATCACACAAACATTTATTATTGGTACAATAGTGGTACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAACATCACACAAACATTTATTATTGGTACAATAGTGGTACATGA  250

seq1  TATGGTAGTAGTCCACTAGTTTTTGCTTGGATTTAGGCCCACTTATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAGTAGTCCACTAGTTTTTGCTTGGATTTAGGCCCACTTATGAAA  300

seq1  AGGAATACTTAGATGGTACTACTAAAATGGACAAGATCCAAGACTACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATACTTAGATGGTACTACTAAAATGGACAAGATCCAAGACTACCTA  350

seq1  TATCATGTATTTAGGAGAAACAGAATACTGTAATTGTTCTAAAGGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGTATTTAGGAGAAACAGAATACTGTAATTGTTCTAAAGGGATAT  400

seq1  AGCAATAAAATGACTCCTAATGACATCTTGCTGCATCCTAATAAAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAATGACTCCTAATGACATCTTGCTGCATCCTAATAAAAGAAC  450

seq1  CTTGTTTTTGTAGTAGATAGGAATTAGAAGATACTCAAGGTCTATAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTGTAGTAGATAGGAATTAGAAGATACTCAAGGTCTATAATGT  500

seq1  ACAAAGAGTGAGCACTCAGCCATAAATGTGGTAATTATTAAGCCTGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGTGAGCACTCAGCCATAAATGTGGTAATTATTAAGCCTGCTCC  550

seq1  TCTTCAAGGCTAAGGGATCAAAAAAGAAGAGGAGGAAGAAAGATTCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGGCTAAGGGATCAAAAAAGAAGAGGAGGAAGAAAGATTCTAAG  600

seq1  AACCAGAAGTGGGTGAAGACTCTGAGAAAAATAGATGACACATAAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGTGGGTGAAGACTCTGAGAAAAATAGATGACACATAAGAATT  650

seq1  CACAAGACATGCACAGATCCTAGCCATACAGGGTCTCAGCACTTAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACATGCACAGATCCTAGCCATACAGGGTCTCAGCACTTAAAGCA  700

seq1  GGTAGACCTAGGGTCTAATTATTACCATGAAGCTGCTTGTAATTGATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACCTAGGGTCTAATTATTACCATGAAGCTGCTTGTAATTGATAGC  750

seq1  TGCTGAGAAGTTTTTCTGAAGTAGACACATGAGAGGATGCTTTGCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAAGTTTTTCTGAAGTAGACACATGAGAGGATGCTTTGCAGAAG  800

seq1  CAGATACTTGAGAGGACACATGATGTTTGGAAAGAATATAAGTATAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTTGAGAGGACACATGATGTTTGGAAAGAATATAAGTATAACCC  850

seq1  AACAGACAGTGAACAATGCTTTTGTATTGGTATGCCTTGAAGTGCTTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGTGAACAATGCTTTTGTATTGGTATGCCTTGAAGTGCTTTGC  900

seq1  AGGCCTTTGCTTGCCATGACTTCATAGAGAGAAAAGGACGAAAGAACTTC  950
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  AGGCCTTTGCTTGCCATGACTTCATAGAGAGAAAAGGACGAA--GACTTC  948

seq1  ATGTAGTATTCTGGATGCAGATTGCCACTTCTCTAGACCCCTAGTCATTA  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTAGTATTCTGGATGCAGATTGCCACTTCTCTAGA-CCCTAGTCATTA  997

seq1  GGGTAACTCTTATTTATTCATTATACTAAAC-ATAT--GTCTGCTTGACC  1047
      |||||||||||||||| ||| |||||||||| ||||   |||   |||||
seq2  GGGTAACTCTTATTTA-TCA-TATACTAAACAATATTGTTCTTGCTGACC  1045

seq1  TCTTATATA-AAATGT-ACAAAATATTTT--ATTAGATTTTTTA-TTAGA  1092
      |||| |||| |||||| ||||||||||||   |||||||||||| |||||
seq2  TCTT-TATATAAATGTAACAAAATATTTTTATTTAGATTTTTTATTTAGA  1094

seq1  AGA  1095
      |||
seq2  AGA  1097