BAC Information

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BAC

Clone NameB6Ng01-319D07
Chromosome15 (Build37)
Map Location 43,878,559 - 43,879,753
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
Downstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319D07.bB6Ng01-319D07.g
ACCGA108897GA108898
length1,1871,183
definitionB6Ng01-319D07.b B6Ng01-319D07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagttgtgttccttctgtttctattttgtgaaatagttggaagaa
tattggtatggacagaagaagagaggacacaaaagagttaggggctttgt
gagcagggatagctacagggcaagatgtagctactagtgtctcctgaccc
cactggctaatttgccaggatttgctactggagtatttagaattcatatg
gcttaaaagattaggattctagttgttgtgcccagcgattgattgtggtg
ttttccttcatgggaaggctctactggtttcaacagagaatggtacagca
ggaaagactaagtaaactaagcaagctgggtggagagattttggagctca
gagtcagagagtctccatgagataggaactagctggtgagatggccaggg
ctgagagtagctgggagaagcatgggaacttggggttctttttaatattt
ctcacaaaaggtatattcttttattttaggatgaaatgttctacatatct
gttaaatccatttggtccaaaacttctgttagtttcactgtgtctctgtt
tagtttctgtttctataatctttccattgatgagagtggggttgttgaag
tctcccactattattgtgggaggttcaatgtgtgctttgagctttagtga
agtttcttttatgaatgtaggtgccctttcatttggagcacagatgttta
gaattgagatttcttcttggtagacttttcctttgatgagtatgaagtgt
ccttacttatcttttttgataccctttggttgaaagttgattttatttca
tattagaatggctactccagcttgtttcttgggaccctttgtttggaaaa
ttgtttttcagccctttactctgaggtagtgtctgtctttgacactgagg
tatgtttcctgtatgcagcaaaattctgggttctttttacatatcagtct
tttagtctaatatatttttattggggtaattgagtccactgatattaaga
tattaaggaaaagaattgatgcttctgttatttttgttgtagaatgtgag
ttatattttatgtgctatccttcttttgggcttgtggaagaactaccttc
ctgccttttctcaaggagtacattgcctccgttgcttcaactgattatcc
ttgtaaggcctagaattattttggcaaaagagaacat
gaattcaaaagaatatataaaattggtacatgtcagttttggggaaattt
aacttgaggaggtgacaaaaagaaattaggggatcttattttagctgtgg
cttttgaagtgatacatgatgaaatattaagataccttgtttctgtaaac
atgtttttatcactatgaaaacctaaaattttaagcttccaatagttttt
aataactaaaattaggtctcagttgcttttctaatatgtcaattatattt
ggaaaatatcctaagaaagatttatcattcaattttactagtgttcttct
tttgatttagattgtttatataggagcaattcatttaaaaggtacatata
gtgtccctttctttccataagaaactaagagacattttaccatggaataa
aaccaagtaaaaattacacatgttgaaatttacaaaaatccatttaaaaa
cctagaaagtaaatccccccccccgaacttctctggaaggccaggtctct
ttccagctaatcactttgtcccacctccctccttggtaatgttacatgtg
agagaggggttaaaacaccatcttccctacaacatccctgtgactggcat
agtgaatcacagcaactctcagcacagcatccctgtgattggcatagtga
atcacaacaatcagcatccttaattgagctctgtttttctaaaatcttgc
cacccaaggctttcttagttaatgatcagttttccccaaagtttaaaagg
gtacataatttgggtctacattatttctttttgttttctctcttgcctct
tatttctttctgatttctgtgtaacaaaagaaaaaaaagcaaaagcaaaa
ttggtaagctatgtgattagtgagaaatcttggacagagaaggaagagat
tgctaaattgaacacttcaatgacatccttcaatgtctctttacctctaa
ggcctttgtgatttccagtaaagattcagagtaaatgaggatttcggagt
attatggacatgtaggatgatcatttccattttaccttaaataagaaatt
ggcttcacaggcttgttctgacatgctcatccatccacagagcagtggac
agtgaatgcttatctgaacttacccaggattgacctcctgattaagtctc
caggttaacctcttttccctctgtgtgctaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43878559_43879753
seq2: B6Ng01-319D07.g_63_1245

seq1  GAATTCAAAAGAATATATAAAATTGGTACATGTCAGTTTTGGGGAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAATATATAAAATTGGTACATGTCAGTTTTGGGGAAATTT  50

seq1  AACTTGAGGAGGTGACAAAAAGAAATTAGGGGATCTTATTTTAGCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGGAGGTGACAAAAAGAAATTAGGGGATCTTATTTTAGCTGTGG  100

seq1  CTTTTGAAGTGATACATGATGAAATATTAAGATACCTTGTTTCTGTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAGTGATACATGATGAAATATTAAGATACCTTGTTTCTGTAAAC  150

seq1  ATGTTTTTATCACTATGAAAACCTAAAATTTTAAGCTTCCAATAGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTATCACTATGAAAACCTAAAATTTTAAGCTTCCAATAGTTTTT  200

seq1  AATAACTAAAATTAGGTCTCAGTTGCTTTTCTAATATGTCAATTATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAAAATTAGGTCTCAGTTGCTTTTCTAATATGTCAATTATATTT  250

seq1  GGAAAATATCCTAAGAAAGATTTATCATTCAATTTTACTAGTGTTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATCCTAAGAAAGATTTATCATTCAATTTTACTAGTGTTCTTCT  300

seq1  TTTGATTTAGATTGTTTATATAGGAGCAATTCATTTAAAAGGTACATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTAGATTGTTTATATAGGAGCAATTCATTTAAAAGGTACATATA  350

seq1  GTGTCCCTTTCTTTCCATAAGAAACTAAGAGACATTTTACCATGGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTTTCTTTCCATAAGAAACTAAGAGACATTTTACCATGGAATAA  400

seq1  AACCAAGTAAAAATTACACATGTTGAAATTTACAAAAATCCATTTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTAAAAATTACACATGTTGAAATTTACAAAAATCCATTTAAAAA  450

seq1  CCTAGAAAGTAAATCCCCCCCCCCGAACTTCTCTGGAAGGCCAGGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAGTAAATCCCCCCCCCCGAACTTCTCTGGAAGGCCAGGTCTCT  500

seq1  TTCCAGCTAATCACTTTGTCCCACCTCCCTCCTTGGTAATGTTACATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTAATCACTTTGTCCCACCTCCCTCCTTGGTAATGTTACATGTG  550

seq1  AGAGAGGGGTTAAAACACCATCTTCCCTACAACATCCCTGTGACTGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGGTTAAAACACCATCTTCCCTACAACATCCCTGTGACTGGCAT  600

seq1  AGTGAATCACAGCAACTCTCAGCACAGCATCCCTGTGATTGGCATAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCACAGCAACTCTCAGCACAGCATCCCTGTGATTGGCATAGTGA  650

seq1  ATCACAACAATCAGCATCCTTAATTGAGCTCTGTTTTTCTAAAATCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACAATCAGCATCCTTAATTGAGCTCTGTTTTTCTAAAATCTTGC  700

seq1  CACCCAAGGCTTTCTTAGTTAATGATCAGTTTTCCCCAAAGTTTAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGGCTTTCTTAGTTAATGATCAGTTTTCCCCAAAGTTTAAAAGG  750

seq1  GTACATAATTTGGGTCTACATTATTTCTTTTTGTTTTCTCTCTTGCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAATTTGGGTCTACATTATTTCTTTTTGTTTTCTCTCTTGCCTCT  800

seq1  TATTTCTTTCTGATTTCTGTGTAACAAAAGAAAAAAAAGCAAAAGCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTCTGATTTCTGTGTAACAAAAGAAAAAAAAGCAAAAGCAAAA  850

seq1  TTGGTAAGCTATGTGATTAGTGAGAAATCTTGGACAGAGAAGGGAAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGGTAAGCTATGTGATTAGTGAGAAATCTTGGACAGAGAA-GGAAGAGA  899

seq1  TTGCTAAAATTGAACACTTCAATGACATCCTTCAAATGTCTCTTTTACCT  950
      ||||| ||||||||||||||||||||||||||| |||||||| |||||||
seq2  TTGCT-AAATTGAACACTTCAATGACATCCTTC-AATGTCTC-TTTACCT  946

seq1  CTAAGGCCTTTGTGATTTCCAGTAAAGATTCAGAAGTAAATGAGGATTTC  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTAAGGCCTTTGTGATTTCCAGTAAAGATTCAG-AGTAAATGAGGATTTC  995

seq1  GGAGTA-TATGGAACAATGTAAGGATGAATCATTTCCAATTTTACCTTAA  1049
      |||||| ||||||   |||| |||||| ||||||||| ||||||||||||
seq2  GGAGTATTATGGA--CATGT-AGGATG-ATCATTTCC-ATTTTACCTTAA  1040

seq1  ATTAAAGGAAATTTGGCTTTCACAGGCT--GTCTGACATGCTCATTCAAT  1097
      ||  |||  || ||||| ||||||||||   |||||||||||||| ||  
seq2  AT--AAG--AAATTGGC-TTCACAGGCTTGTTCTGACATGCTCATCCATC  1085

seq1  CACAGAGCAGTGGACAGTG-ATGC-TATCTGAGCCTACACCAAGA-TGCC  1144
      ||||||||||||||||||| |||| ||||||| | ||| ||| || || |
seq2  CACAGAGCAGTGGACAGTGAATGCTTATCTGAACTTAC-CCAGGATTGAC  1134

seq1  CTCCCTGTATTTAGTCTCCCAGTTTTTACCTCTTTTCCCTC--TGTGCTA  1192
      || |||| ||| |||||||  |  || ||||||||||||||  |||||||
seq2  CT-CCTG-ATTAAGTCTCCAGG--TTAACCTCTTTTCCCTCTGTGTGCTA  1180

seq1  AGA  1195
      |||
seq2  AGA  1183