BAC Information

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BAC

Clone NameB6Ng01-321M17
Chromosome15 (Build37)
Map Location 60,588,188 - 60,734,726
singlet/doubletdoublet
Overlap geneLOC100040311, D330050I23Rik, 9930014A18Rik
Upstream geneLOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094, EG632412
Downstream geneA1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321M17.bB6Ng01-321M17.g
ACCGA110809GA110810
length9791,112
definitionB6Ng01-321M17.b B6Ng01-321M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,588,188 - 60,589,172)(60,733,597 - 60,734,726)
sequence
gaattcatattaaattccatgaaagctgcttacctctgctgtttcattag
ctgtaatagatacctgtggtggtttgaatgttgactctcattgtcatggg
catttgaatagctggtacctaggtggtggtaccgtttggttagatttaag
agatgtagcattattagagtgaggatgtccatgggaccaaactttgagag
cttacagactcttgccatttctagttagcactctgtggttcacgcttatg
gttcaaggtatgagccctcaatttcctgcccttgccactatgtcttccct
ccaccatatgggctctcagcatatgtctgagccataagcccaaataaact
ctttattctgtaagttgacttggtcaaggtgtttgatcacagtaacagaa
aagtaaccaatacatcacttattgttaatcctatattgtagatgtcaaac
ctactactcagaactttgagcaagacctgtcactccgtatcaacttttgg
cagatactatcaagaaacaaatacttgtaatctatgtgtattctatgcac
tgtttcatgtcttctttatctatcaatcttcaagacaggtctttggtgca
ggcatcaccattaacctaattttgtatgacaaaagtaaggctcggagatg
tctgttaacttctgctaagccatacaattgacaagtattgaagctaagtt
aaccctgtttgtaatctcagaactcaaggattttgatctcaactgattac
tgctaccatctcataagaggagtgtcttatttatatgtctgctgccttct
caaggatcatcacaataacccagagtgaggtatggtatcatctcatctag
aaactgaattttctttctttcttctttctttctttttttttttctgtttt
ttttttttttggaaaagaaacagaatttttattcacggccatgggggagg
ggaattaaagagggtagggagaagaaggg

gaattccattgtggcagtgagtatactggagtgcagagcaatgattgtgg
aaagaacaggtccctgtagtggtgaatggagaagagatgccatctctgat
gtgtttttaataacaaaagctaaaatggacaagaatatctgcaaagttta
tcaagttttaaaatgatttctgtggtaacatttgataagccctgccctgc
tactgttctttcttacattcggttagtgctggattgcatcacagctgcct
ttggctcctcaaatacatctagtctttccttgactgaaagacttccaagc
ctttctcattcatgtttcccatccacaattacttttggtcctcatgtatc
tctcatggcaaattaaattagttccccagcctggacaagtaatgggtact
gattcacacagagtgcaaacatcagagagcagatgtgttcagctctgtgg
gccatatggcttgtgtaacatgtactcaactctattcttgtaatgcttac
ttttcttaatattacttttctctttcttgtagcaaatacttgagagaagc
aactgataatagaaaatttatttgggattatggttttcgaggctttctat
ccatcatagcagaagaggcatgtacaaaaaggctttgtgatagcaggagc
atgtgacaggaaagagagaactataccaaaacttaaagtgaatatgactt
ttggagtcatgtctcttattacctacacccatcaggtaaatattcagctt
ttgcaaatgttctgtgtgcttacaaaacactatcaccagctgtggaccct
atgccctaacatatgagttgtggggggaacatttcaaattcaaaccataa
tataatgcactcccacgtaaaacagaaaagaattcagatacccaagttct
agtaaagcttttataaatagtaatgggccagacttggtctgtgggcagta
catcactgacatttcctatggaccattattgacatgtgaagaaaaaaaag
aaattgaccttgaaacttttataacaagtacaggttagtacaggaggaga
gatgtcagtattaaagcacttgctagaagaaaaacatatgttttgattca
gagcctaccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_60588188_60589172
seq2: B6Ng01-321M17.b_43_1021

seq1  GAATTCATATTAAATTCCATGAAAGCTGCTTACCTCTGCTGTTTCATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTAAATTCCATGAAAGCTGCTTACCTCTGCTGTTTCATTAG  50

seq1  CTGTAATAGATACCTGTGGTGGTTTGAATGTTGACTCTCATTGTCATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATAGATACCTGTGGTGGTTTGAATGTTGACTCTCATTGTCATGGG  100

seq1  CATTTGAATAGCTGGTACCTAGGTGGTGGTACCGTTTGGTTAGATTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATAGCTGGTACCTAGGTGGTGGTACCGTTTGGTTAGATTTAAG  150

seq1  AGATGTAGCATTATTAGAGTGAGGATGTCCATGGGACCAAACTTTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGCATTATTAGAGTGAGGATGTCCATGGGACCAAACTTTGAGAG  200

seq1  CTTACAGACTCTTGCCATTTCTAGTTAGCACTCTGTGGTTCACGCTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACTCTTGCCATTTCTAGTTAGCACTCTGTGGTTCACGCTTATG  250

seq1  GTTCAAGGTATGAGCCCTCAATTTCCTGCCCTTGCCACTATGTCTTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGTATGAGCCCTCAATTTCCTGCCCTTGCCACTATGTCTTCCCT  300

seq1  CCACCATATGGGCTCTCAGCATATGTCTGAGCCATAAGCCCAAATAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATATGGGCTCTCAGCATATGTCTGAGCCATAAGCCCAAATAAACT  350

seq1  CTTTATTCTGTAAGTTGACTTGGTCAAGGTGTTTGATCACAGTAACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTGTAAGTTGACTTGGTCAAGGTGTTTGATCACAGTAACAGAA  400

seq1  AAGTAACCAATACATCACTTATTGTTAATCCTATATTGTAGATGTCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACCAATACATCACTTATTGTTAATCCTATATTGTAGATGTCAAAC  450

seq1  CTACTACTCAGAACTTTGAGCAAGACCTGTCACTCCGTATCAACTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTCAGAACTTTGAGCAAGACCTGTCACTCCGTATCAACTTTTGG  500

seq1  CAGATACTATCAAGAAACAAATACTTGTAATCTATGTGTATTCTATGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTATCAAGAAACAAATACTTGTAATCTATGTGTATTCTATGCAC  550

seq1  TGTTTCATGTCTTCTTTATCTATCAATCTTCAAGACAGGTCTTTGGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGTCTTCTTTATCTATCAATCTTCAAGACAGGTCTTTGGTGCA  600

seq1  GGCATCACCATTAACCTAATTTTGTATGACAAAAGTAAGGCTCGGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCACCATTAACCTAATTTTGTATGACAAAAGTAAGGCTCGGAGATG  650

seq1  TCTGTTAACTTCTGCTAAGCCATACAATTGACAAGTATTGAAGCTAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAACTTCTGCTAAGCCATACAATTGACAAGTATTGAAGCTAAGTT  700

seq1  AACCCTGTTTGTAATCTCAGAACTCAAGGATTTTGATCTCAACTGATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTTTGTAATCTCAGAACTCAAGGATTTTGATCTCAACTGATTAC  750

seq1  TGCTACCATCTCATAAGAGGAGTGTCTTATTTATATGTCTGCTGCCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCATCTCATAAGAGGAGTGTCTTATTTATATGTCTGCTGCCTTCT  800

seq1  CAAGGATCATCACAATAACCCAGAGTGAGGTATGGTATCATCTCATCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCATCACAATAACCCAGAGTGAGGTATGGTATCATCTCATCTAG  850

seq1  AAACTGAATTTTCTTTCTTTCTTTCTTTCTTTTCTTTTTTTTTTTTTTTT  900
      ||||||||||||||||||||| |||||||        ||| |||||||||
seq2  AAACTGAATTTTCTTTCTTTC-TTCTTTC--------TTTCTTTTTTTTT  891

seq1  TTTTTTTTTTTTTTTTTTTTGTATAG-AACAGA--TTTTATTCA-GGGCA  946
      || | |||||||||||||| | | || ||||||  ||||||||| || ||
seq2  TTCTGTTTTTTTTTTTTTTGGAAAAGAAACAGAATTTTTATTCACGGCCA  941

seq1  T-GGGGAGGGGAATT-AAGAGGGTAGGAGAGAGGGGAAGGG  985
      | ||||||||||||| |||||||||||   |||  ||||||
seq2  TGGGGGAGGGGAATTAAAGAGGGTAGG---GAGAAGAAGGG  979


seq1: chr15_60733597_60734726
seq2: B6Ng01-321M17.g_69_1180 (reverse)

seq1  AAAGGTAGACTCTGGATATCAAAACCATATGTTTTTCCTTTCTAGGCAAG  50
      |||||||| |||||   ||||||| ||||||||||||  ||||| |||||
seq2  AAAGGTAGGCTCTG--AATCAAAA-CATATGTTTTTC--TTCTA-GCAAG  44

seq1  TGCTTTAATAACTGAACCATCTTCTCCTCCCTGTACTAACCCTGTACTTT  100
      ||||||||| |||||  |||| |||||| |||||||||| ||||||| ||
seq2  TGCTTTAAT-ACTGA--CATC-TCTCCT-CCTGTACTAA-CCTGTAC-TT  87

seq1  GTTAT-AGAGTTTCAAGGTCAATTTCTTTTTTTTTCTTTCCACATGTCAA  149
      ||||| | |||||||||||||||||| |||||||||||  ||||||||||
seq2  GTTATAAAAGTTTCAAGGTCAATTTC-TTTTTTTTCTT--CACATGTCAA  134

seq1  TAATGGTCCATAGGAAATGTCAGTGATGTACTGCCCACAGACCAAGTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTCCATAGGAAATGTCAGTGATGTACTGCCCACAGACCAAGTCTG  184

seq1  GCCCATTACCTATTTTATAAAAAGCTTTACTAGAACTTGGGTATCTGAAT  249
      |||||||| ||| ||||| |||||||||||||||||||||||||||||||
seq2  GCCCATTA-CTA-TTTAT-AAAAGCTTTACTAGAACTTGGGTATCTGAAT  231

seq1  TCTTTTCTGTTTTACGTGGGAGTGCATTATATTATGGTTTGAATTTGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGTTTTACGTGGGAGTGCATTATATTATGGTTTGAATTTGAAA  281

seq1  TGTTCCCCCCACAACTCATATGTTAGGGCATAGGGTCCACAGCTGGTGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCCCACAACTCATATGTTAGGGCATAGGGTCCACAGCTGGTGAT  331

seq1  AGTGTTTTGTAAGCACACAGAACATTTGCAAAAGCTGAATATTTACCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGTAAGCACACAGAACATTTGCAAAAGCTGAATATTTACCTGA  381

seq1  TGGGTGTAGGTAATAAGAGACATGACTCCAAAAGTCATATTCACTTTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTAGGTAATAAGAGACATGACTCCAAAAGTCATATTCACTTTAAG  431

seq1  TTTTGGTATAGTTCTCTCTTTCCTGTCACATGCTCCTGCTATCACAAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTATAGTTCTCTCTTTCCTGTCACATGCTCCTGCTATCACAAAGC  481

seq1  CTTTTTGTACATGCCTCTTCTGCTATGATGGATAGAAAGCCTCGAAAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTACATGCCTCTTCTGCTATGATGGATAGAAAGCCTCGAAAACC  531

seq1  ATAATCCCAAATAAATTTTCTATTATCAGTTGCTTCTCTCAAGTATTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCAAATAAATTTTCTATTATCAGTTGCTTCTCTCAAGTATTTGC  581

seq1  TACAAGAAAGAGAAAAGTAATATTAAGAAAAGTAAGCATTACAAGAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAAGAGAAAAGTAATATTAAGAAAAGTAAGCATTACAAGAATAG  631

seq1  AGTTGAGTACATGTTACACAAGCCATATGGCCCACAGAGCTGAACACATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTACATGTTACACAAGCCATATGGCCCACAGAGCTGAACACATC  681

seq1  TGCTCTCTGATGTTTGCACTCTGTGTGAATCAGTACCCATTACTTGTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGATGTTTGCACTCTGTGTGAATCAGTACCCATTACTTGTCCA  731

seq1  GGCTGGGGAACTAATTTAATTTGCCATGAGAGATACATGAGGACCAAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAACTAATTTAATTTGCCATGAGAGATACATGAGGACCAAAAG  781

seq1  TAATTGTGGATGGGAAACATGAATGAGAAAGGCTTGGAAGTCTTTCAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGGATGGGAAACATGAATGAGAAAGGCTTGGAAGTCTTTCAGTC  831

seq1  AAGGAAAGACTAGATGTATTTGAGGAGCCAAAGGCAGCTGTGATGCAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGACTAGATGTATTTGAGGAGCCAAAGGCAGCTGTGATGCAATC  881

seq1  CAGCACTAACCGAATGTAAGAAAGAACAGTAGCAGGGCAGGGCTTATCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAACCGAATGTAAGAAAGAACAGTAGCAGGGCAGGGCTTATCAA  931

seq1  ATGTTACCACAGAAATCATTTTAAAACTTGATAAACTTTGCAGATATTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCACAGAAATCATTTTAAAACTTGATAAACTTTGCAGATATTCT  981

seq1  TGTCCATTTTAGCTTTTGTTATTAAAAACACATCAGAGATGGCATCTCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTTTAGCTTTTGTTATTAAAAACACATCAGAGATGGCATCTCTT  1031

seq1  CTCCATTCACCACTACAGGGACCTGTTCTTTCCACAATCATTGCTCTGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCACCACTACAGGGACCTGTTCTTTCCACAATCATTGCTCTGCA  1081

seq1  CTCCAGTATACTCACTGCCACAATGGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  CTCCAGTATACTCACTGCCACAATGGAATTC  1112


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