BAC Information

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BAC

Clone NameB6Ng01-322H16
Chromosome15 (Build37)
Map Location 49,400,786 - 49,506,740
singlet/doubletdoublet
Overlap geneLOC100039539, LOC665160
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneTrps1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322H16.bB6Ng01-322H16.g
ACCGA111310GA111311
length1,1801,179
definitionB6Ng01-322H16.b B6Ng01-322H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,400,786 - 49,401,715)(49,505,565 - 49,506,740)
sequence
gaattcagtaagcatgttgcctattcagtgacattcagaattgcctctag
tattgtaagaaagatagtgaaagaaatcaggcattactatctactacata
gagttagaaatctcagggcaagcttagcaaagtaagtttagatttcttat
tatagttatgtatggcagaccacattacttattagtagaaagcccccccc
ccccctccataatcacttagaataaagccgagtcactccaatatacagga
atttacaatggtttaggaagtagttagggctgtggtttaaggaggaacta
gagtattacatcattcatgagaaggttagctagagcagaaccctctaatt
agaattgtggcttgggcctgaaaacacttgcccctggagtataaatacct
cacacctgcttctaataatatagctgaacttagatagaggtgactttgtc
tcagttgtttattgtccagttcctgccagtctttatatttgcattcctct
gttttgcgtaagagtcattaggcatcaggtaacctcactgtaccttgctg
atgtgtcacctaacttctctattctcttttgtattaaaaatctgatgctt
gtttggagaaaattacattcagatacagcactctctttgtgtccatgtct
gtctgtcacagttttcgctgactccctgcccacctgtatctgaaccctga
tttctcccatggattaagggggggggccgactaaggccaatctgtggcaa
acaagttcataccgacttgtagtcatttcattttttttttttcgtttaat
caactatttgcttaagagcataacaaagaaatgagagaggggagtaaagt
cctaagaagggtctttctttcatatttctctcaatatgtaacatgaaagc
aatgtgatagggatagatgcagataaaaatggcaaataaacatgtgtgtt
ccttattttcatgtatgtctgtgtttgtgttttcacttcataataatgac
tgaaaaatattgttattcaaggtccaccttataaaaatatcacttgtgtt
attttaggtatttctggcatgagactgatacttttatatttgaaataaaa
cttgcattttaaatatgaagaatagacaaatgtaatgcaataataaattt
taatactactttgaatgaattaattaacag

gaattctttgctctggagtggtatattgtaagacttggagaaactattta
ggatgaaacactagccagcacagacagggaacaaaacatagccaaataac
tcattgtatattgattttgatggatacgtttttaagttcaattaattaat
attaagttaatatttcacaagtttatttgagcaaatacataagaacctgg
agatacagaatattgaatactcttgaatatgtatcatttaagttaaatac
taaaagaactttattgaatatttttataaacagagtagtgtggcccactt
tatcagtgttctgcccagtaaattaattttgagataataaacaaaagaga
atatggttagattctcaattgtgttaattttatgtctgaattttaatgga
ataaataaaacaagtatttttcttgtctccttggttgttttttcactatg
aaacagctcattgtgcccaggatttcaattaaagttaattatttatttga
ttagagtgaatatttgatgcaggttctatttcaataagacaatttcaata
agtaaaaaaaatagattgttttgatgagcatgaatctgctctactataca
cataatttctatgcagttattattcaaagcgaagcaaaattaatagttta
ttcatgatatgtgttttccttaccatgaaagttaattttatctaagtaac
acgttaatggtcctgggatagacaaacaagtcattttctgacaactgcag
aagccagaaaataagttctattttaagtaagataaataattataaacatt
attatttagtgtgaatttcagtatataatcgaatttattattaaattgtc
attgtgccagactgtccattattttctttatcctactttgtaaattaaac
tttgtaaattctcccaacttacattattttaaggagacattagtcatttt
agcaccaattatgggttggtctgtaaaaaatatgttccctttaaatgatg
aagtagcattgggttaatggtataagatctagcaaagaatactccttcag
aagagattggtggacttatttgaagatgaaacaatgtacaggtgaattta
tgctgtctttgtcaatgtaaatttgtacatccaatttttcttaataccat
atgttaattgatattgatatttatatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49400786_49401715
seq2: B6Ng01-322H16.b_295_1224

seq1  ATTTACAATGGTTTAGGAAGTAGTTAGGGCTGTGGTTTAAGGAGGAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAATGGTTTAGGAAGTAGTTAGGGCTGTGGTTTAAGGAGGAACTA  50

seq1  GAGTATTACATCATTCATGAGAAGGTTAGCTAGAGCAGAACCCTCTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTACATCATTCATGAGAAGGTTAGCTAGAGCAGAACCCTCTAATT  100

seq1  AGAATTGTGGCTTGGGCCTGAAAACACTTGCCCCTGGAGTATAAATACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTGGCTTGGGCCTGAAAACACTTGCCCCTGGAGTATAAATACCT  150

seq1  CACACCTGCTTCTAATAATATAGCTGAACTTAGATAGAGGTGACTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCTTCTAATAATATAGCTGAACTTAGATAGAGGTGACTTTGTC  200

seq1  TCAGTTGTTTATTGTCCAGTTCCTGCCAGTCTTTATATTTGCATTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTTTATTGTCCAGTTCCTGCCAGTCTTTATATTTGCATTCCTCT  250

seq1  GTTTTGCGTAAGAGTCATTAGGCATCAGGTAACCTCACTGTACCTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCGTAAGAGTCATTAGGCATCAGGTAACCTCACTGTACCTTGCTG  300

seq1  ATGTGTCACCTAACTTCTCTATTCTCTTTTGTATTAAAAATCTGATGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACCTAACTTCTCTATTCTCTTTTGTATTAAAAATCTGATGCTT  350

seq1  GTTTGGAGAAAATTACATTCAGATACAGCACTCTCTTTGTGTCCATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGAAAATTACATTCAGATACAGCACTCTCTTTGTGTCCATGTCT  400

seq1  GTCTGTCACAGTTTTCGCTGACTCCCTGCCCACCTGTATCTGAACCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCACAGTTTTCGCTGACTCCCTGCCCACCTGTATCTGAACCCTGA  450

seq1  TTTCTCCCATGGATTAAGGGGGGGGGCCGACTAAGGCCAATCTGTGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCATGGATTAAGGGGGGGGGCCGACTAAGGCCAATCTGTGGCAA  500

seq1  ACAAGTTCATACCGACTTGTAGTCATTTCA-TTTTTTTTTTTCGTTTAAT  549
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAAGTTCATACCGACTTGTAGTCATTTCATTTTTTTTTTTTCGTTTAAT  550

seq1  CAACTATTTGCTTAAGAGCAATAACAAAGAAATGAGAGAGGGGAGTAAAG  599
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAACTATTTGCTTAAGAGC-ATAACAAAGAAATGAGAGAGGGGAGTAAAG  599

seq1  TCCTAAGAAGGGTCTTTCTTTCATATTTTCTCTCAATATGTAACATGAAA  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCTAAGAAGGGTCTTTCTTTCATA-TTTCTCTCAATATGTAACATGAAA  648

seq1  GCAATGTGATAGGGATAGATGCAGATAAAAATGGCAAATAAACATGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGATAGGGATAGATGCAGATAAAAATGGCAAATAAACATGTGTG  698

seq1  TTCCTTATTTTCATGTATGTCTGTGTTTGTGTTTTCACTTCATAATAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATTTTCATGTATGTCTGTGTTTGTGTTTTCACTTCATAATAATG  748

seq1  ACTG-AAAATA-TGT--ATCAAGGTCCACCTTAT-AAAATATCACTTGTG  794
      |||| |||||| |||   |||||||||||||||| |||||||||||||||
seq2  ACTGAAAAATATTGTTATTCAAGGTCCACCTTATAAAAATATCACTTGTG  798

seq1  TTATTTTA-GTATTTCT-GCATGAGACTTAATACTTTTATATTTGAAATA  842
      |||||||| |||||||| ||||||||| | ||||||||||||||||||||
seq2  TTATTTTAGGTATTTCTGGCATGAGAC-TGATACTTTTATATTTGAAATA  847

seq1  AAACTGGCATTTTAAAATATGAAG-ATAGACAAAATGT-ATGCAATAATT  890
      ||||| ||||||| |||||||||| |||||| |||||| |||||||||| 
seq2  AAACTTGCATTTT-AAATATGAAGAATAGAC-AAATGTAATGCAATAAT-  894

seq1  AAAATTTTAAATAACTACTTTGAATGACATTAATTAACAG  930
       |||||||||   |||||||||||||| ||||||||||||
seq2  -AAATTTTAA--TACTACTTTGAATGA-ATTAATTAACAG  930


seq1: chr15_49505565_49506740
seq2: B6Ng01-322H16.g_67_1245 (reverse)

seq1  AATATATAAATATTCATATATTAA-TAACATTTATGTATATAAG-AAAAT  48
      |||||||||||| ||| |||| || |||||| |  |||| |||| |||||
seq2  AATATATAAATA-TCA-ATATCAATTAACATAT-GGTAT-TAAGAAAAAT  46

seq1  TGAATGTACATATTTTACA-TGAC-AAGACAGCATAAATTCCACCTGTAC  96
      || ||||||| | |||||| |||| ||||||||||||||| |||||||||
seq2  TGGATGTACA-AATTTACATTGACAAAGACAGCATAAATT-CACCTGTAC  94

seq1  ATTGTTTCATCTTCAATTAAGTC--ACAATCTC-TCTGAAGGAGTAATTC  143
      |||||||||||||||| ||||||   ||||||| ||||||||||| ||||
seq2  ATTGTTTCATCTTCAAATAAGTCCACCAATCTCTTCTGAAGGAGT-ATTC  143

seq1  TTTGCTAGATC-TATACCATTAACCCAATGCTAC-TCATCATTT-AAGGG  190
      ||||||||||| |||||||||||||||||||||| ||||||||| |||||
seq2  TTTGCTAGATCTTATACCATTAACCCAATGCTACTTCATCATTTAAAGGG  193

seq1  AACATTATTTTTTACAGACCAA-CCATAATTGGTGCTAAAATGACTAATG  239
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACA-TATTTTTTACAGACCAACCCATAATTGGTGCTAAAATGACTAATG  242

seq1  TCTCCTTAAAATAATGTAAGTTGGGAGAATTTACAAAGTTTAATTTACAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAAAATAATGTAAGTTGGGAGAATTTACAAAGTTTAATTTACAA  292

seq1  AGTAGGATAAAGAAAATAATGGACAGTCTGGCACAATGACAATTTAATAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGATAAAGAAAATAATGGACAGTCTGGCACAATGACAATTTAATAA  342

seq1  TAAATTCGATTATATACTGAAATTCACACTAAATAATAATGTTTATAATT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCGATTATATACTGAAATTCACACTAAATAATAATGTTTATAATT  392

seq1  ATTTATCTTACTTAAAATAGAACTTATTTTCTGGCTTCTGCAGTTGTCAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTACTTAAAATAGAACTTATTTTCTGGCTTCTGCAGTTGTCAG  442

seq1  AAAATGACTTGTTTGTCTATCCCAGGACCATTAACGTGTTACTTAGATAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTTGTTTGTCTATCCCAGGACCATTAACGTGTTACTTAGATAA  492

seq1  AATTAACTTTCATGGTAAGGAAAACACATATCATGAATAAACTATTAATT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTTTCATGGTAAGGAAAACACATATCATGAATAAACTATTAATT  542

seq1  TTGCTTCGCTTTGAATAATAACTGCATAGAAATTATGTGTATAGTAGAGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCGCTTTGAATAATAACTGCATAGAAATTATGTGTATAGTAGAGC  592

seq1  AGATTCATGCTCATCAAAACAATCTATTTTTTTTACTTATTGAAATTGTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATGCTCATCAAAACAATCTATTTTTTTTACTTATTGAAATTGTC  642

seq1  TTATTGAAATAGAACCTGCATCAAATATTCACTCTAATCAAATAAATAAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAAATAGAACCTGCATCAAATATTCACTCTAATCAAATAAATAAT  692

seq1  TAACTTTAATTGAAATCCTGGGCACAATGAGCTGTTTCATAGTGAAAAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAATTGAAATCCTGGGCACAATGAGCTGTTTCATAGTGAAAAAA  742

seq1  CAACCAAGGAGACAAGAAAAATACTTGTTTTATTTATTCCATTAAAATTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGGAGACAAGAAAAATACTTGTTTTATTTATTCCATTAAAATTC  792

seq1  AGACATAAAATTAACACAATTGAGAATCTAACCATATTCTCTTTTGTTTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAATTAACACAATTGAGAATCTAACCATATTCTCTTTTGTTTA  842

seq1  TTATCTCAAAATTAATTTACTGGGCAGAACACTGATAAAGTGGGCCACAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAAAATTAATTTACTGGGCAGAACACTGATAAAGTGGGCCACAC  892

seq1  TACTCTGTTTATAAAAATATTCAATAAAGTTCTTTTAGTATTTAACTTAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTTATAAAAATATTCAATAAAGTTCTTTTAGTATTTAACTTAA  942

seq1  ATGATACATATTCAAGAGTATTCAATATTCTGTATCTCCAGGTTCTTATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACATATTCAAGAGTATTCAATATTCTGTATCTCCAGGTTCTTATG  992

seq1  TATTTGCTCAAATAAACTTGTGAAATATTAACTTAATATTAATTAATTGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTCAAATAAACTTGTGAAATATTAACTTAATATTAATTAATTGA  1042

seq1  ACTTAAAAACGTATCCATCAAAATCAATATACAATGAGTTATTTGGCTAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAACGTATCCATCAAAATCAATATACAATGAGTTATTTGGCTAT  1092

seq1  GTTTTGTTCCCTGTCTGTGCTGGCTAGTGTTTCATCCTAAATAGTTTCTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCCCTGTCTGTGCTGGCTAGTGTTTCATCCTAAATAGTTTCTC  1142

seq1  CAAGTCTTACAATATACCACTCCAGAGCAAAGAATTC  1176
      |||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTACAATATACCACTCCAGAGCAAAGAATTC  1179


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