BAC Information

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BAC

Clone NameB6Ng01-326N16
Chromosome15 (Build37)
Map Location 55,456,286 - 55,472,792
singlet/doubletdoublet
Overlap geneMtbp, Sntb1
Upstream geneNov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13
Downstream geneLOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326N16.bB6Ng01-326N16.g
ACCGA114556GA114557
length1,166477
definitionB6Ng01-326N16.b B6Ng01-326N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,471,621 - 55,472,792)(55,456,286 - 55,456,767)
sequence
gaattctttctattcttcagtagattctcagaatgcctctggattttgct
ttttatatgtctgcattccagctatttaactatagcctgagaccatgact
gaaatgaggtagtgacatggacatccctgtcagtaaaacacatcacgttt
gttactagtgtatcagtcctccatctttgtacttgttcttttttttttat
tagatattttcttcatttacatttcaaatgctatcccctttcctagtttc
ctctctgaaagtcccgtataccctccccacccgtgctctccaacctaacc
actcacgcttcctggccctggcattcccctatactggggcatataagatt
cgcaaggcctttcctcccattgatggcaccgactaaagctacttcatagc
aactcggaaacatacaagaactagtctgttttatccttgtttctatccag
ggctattttgctcccctttcatttctttggattcaagtcaccctagctat
aaaatacagagattggagcagacagtttttcatgtcactattcaaaactg
tgtccctttttttagtggcatgggatgtggacaattaatctccagctctg
acatcagatagacttgagtccacacttgcttattcattgtaaaagttgtg
gtttcatgaagttgaaaaacatctctagatcttagttttcccatatgaaa
gatggggacaatgacaattgctacctagggtttcgacagtgaaagattac
cttaactgcattaaaggaggtggaaggctcactccgtgcctggtcatgat
cctccaacagcagcatgcatccatccctccttcctggctgtggatgcagt
gttaacagcccagctgctgcaaagtcccgctgccttgagtttcctaccac
gagggattcaactctgagctaaaatatagccttaagttgcctttgtaaag
aacactttcatcatggcaacaataacagcaataaaagaaacccggacagt
gctcttatgaaagtgatcttcagtttggtagctattattgcatgtcacac
tgttcttattgcacagaggtgccaccatcagaacaaaagtcaagggcagc
agaggtattcaggagttccaattttttctattagtcaggtgataactcta
ctttctgagtctctat
agagtggccgcctctctgaggtatcacctgcttgctggaggatgaattta
ccccttttgtacaattaagcttttattttaattttgtgttttaatttgaa
atgttctccacctcctctgcctgccccacttctatgaattgaacccaaga
ttttggacatggcacacaggtgttctactactgagccaaatccccagcct
gaccatattttagaaagtaagactatagctttcttcctctttgtggtgga
atgaaatagctaagaaaagaaggaaaaaatacatatctcagctattagta
gaaaccaaatgtgtatgtcccaagtactgatacattggtggtccagtgtg
agggtgagcatgggccaggactgtcgaagacatgggatgtgggacagtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtatctgtct
gtctgtctgtttgtcttttttgtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_55471621_55472792
seq2: B6Ng01-326N16.b_52_1217 (reverse)

seq1  ATAGAGACCTTCAG-AAGTAGAGTTATCACTTGACCTAATTTAGAAAAAT  49
      ||||||||  |||| ||||||||||||||| ||| ||||  |||||||| 
seq2  ATAGAGAC--TCAGAAAGTAGAGTTATCACCTGA-CTAA--TAGAAAAAA  45

seq1  TTGGGAAACTTCCTGATTCCCTTCTGCTGCCC-TGACTTTTGTTCTGATG  98
      ||||  ||| |||||| | || |||||||||| |||||||||||||||||
seq2  TTGG--AAC-TCCTGAATACC-TCTGCTGCCCTTGACTTTTGTTCTGATG  91

seq1  GTGGCACTTCTGTGCAATAAGAACAGTGTGACATGCAATAATAGCTACCA  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCTCTGTGCAATAAGAACAGTGTGACATGCAATAATAGCTACCA  141

seq1  AACTGAAGATCACTTTTCAT-AGAGCACTGTCC-GGTTTCTTTTATTGCT  196
      ||||||||||||| |||||| |||||||||||| ||||||||||||||||
seq2  AACTGAAGATCAC-TTTCATAAGAGCACTGTCCGGGTTTCTTTTATTGCT  190

seq1  GTTATTGTTGCCATGATGAAAGTGTTCTTTACAAAGGCAACTTAAGGCTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTTGCCATGATGAAAGTGTTCTTTACAAAGGCAACTTAAGGCTA  240

seq1  TATTTTAGCTCAGAGTTGAATCCCTCGTGGTAGGAAACTCAAGGCAGCGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGCTCAGAGTTGAATCCCTCGTGGTAGGAAACTCAAGGCAGCGG  290

seq1  GACTTTGCAGCAGCTGGGCTGTTAACACTGCATCCACAGCCAGGAAGGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCAGCAGCTGGGCTGTTAACACTGCATCCACAGCCAGGAAGGAG  340

seq1  GGATGGATGCATGCTGCTGTTGGAGGATCATGACCAGGCACGGAGTGAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATGCATGCTGCTGTTGGAGGATCATGACCAGGCACGGAGTGAGC  390

seq1  CTTCCACCTCCTTTAATGCAGTTAAGGTAATCTTTCACTGTCGAAACCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTCCTTTAATGCAGTTAAGGTAATCTTTCACTGTCGAAACCCT  440

seq1  AGGTAGCAATTGTCATTGTCCCCATCTTTCATATGGGAAAACTAAGATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCAATTGTCATTGTCCCCATCTTTCATATGGGAAAACTAAGATCT  490

seq1  AGAGATGTTTTTCAACTTCATGAAACCACAACTTTTACAATGAATAAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTTTTTCAACTTCATGAAACCACAACTTTTACAATGAATAAGCA  540

seq1  AGTGTGGACTCAAGTCTATCTGATGTCAGAGCTGGAGATTAATTGTCCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGACTCAAGTCTATCTGATGTCAGAGCTGGAGATTAATTGTCCAC  590

seq1  ATCCCATGCCACTAAAAAAAGGGACACAGTTTTGAATAGTGACATGAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGCCACTAAAAAAAGGGACACAGTTTTGAATAGTGACATGAAAA  640

seq1  ACTGTCTGCTCCAATCTCTGTATTTTATAGCTAGGGTGACTTGAATCCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGCTCCAATCTCTGTATTTTATAGCTAGGGTGACTTGAATCCAA  690

seq1  AGAAATGAAAGGGGAGCAAAATAGCCCTGGATAGAAACAAGGATAAAACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAAGGGGAGCAAAATAGCCCTGGATAGAAACAAGGATAAAACA  740

seq1  GACTAGTTCTTGTATGTTTCCGAGTTGCTATGAAGTAGCTTTAGTCGGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTTCTTGTATGTTTCCGAGTTGCTATGAAGTAGCTTTAGTCGGTG  790

seq1  CCATCAATGGGAGGAAAGGCCTTGCGAATCTTATATGCCCCAGTATAGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATGGGAGGAAAGGCCTTGCGAATCTTATATGCCCCAGTATAGGG  840

seq1  GAATGCCAGGGCCAGGAAGCGTGAGTGGTTAGGTTGGAGAGCACGGGTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAGGGCCAGGAAGCGTGAGTGGTTAGGTTGGAGAGCACGGGTGG  890

seq1  GGAGGGTATACGGGACTTTCAGAGAGGAAACTAGGAAAGGGGATAGCATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTATACGGGACTTTCAGAGAGGAAACTAGGAAAGGGGATAGCATT  940

seq1  TGAAATGTAAATGAAGAAAATATCTAATAAAAAAAAAAGAACAAGTACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTAAATGAAGAAAATATCTAATAAAAAAAAAAGAACAAGTACAA  990

seq1  AGATGGAGGACTGATACACTAGTAACAAACGTGATGTGTTTTACTGACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGACTGATACACTAGTAACAAACGTGATGTGTTTTACTGACAG  1040

seq1  GGATGTCCATGTCACTACCTCATTTCAGTCATGGTCTCAGGCTATAGTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCATGTCACTACCTCATTTCAGTCATGGTCTCAGGCTATAGTTA  1090

seq1  AATAGCTGGAATGCAGACATATAAAAAGCAAAATCCAGAGGCATTCTGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGGAATGCAGACATATAAAAAGCAAAATCCAGAGGCATTCTGAG  1140

seq1  AATCTACTGAAGAATAGAAAGAATTC  1172
      ||||||||||||||||||||||||||
seq2  AATCTACTGAAGAATAGAAAGAATTC  1166

seq1: chr15_55456286_55456767
seq2: B6Ng01-326N16.g_66_548

seq1  GAATTCAGAGTGGCCGCCTCTCTGAGGTATCACCTGCTTGCTGGAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTGGCCGCCTCTCTGAGGTATCACCTGCTTGCTGGAGGATG  50

seq1  AATTTACCCCTTTTGTACAATTAAGCTTTTATTTTAATTTTGTGTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCCCTTTTGTACAATTAAGCTTTTATTTTAATTTTGTGTTTTAA  100

seq1  TTTGAAATGTTCTCCACCTCCTCTGCCTGCCCCACTTCTATGAATTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGTTCTCCACCTCCTCTGCCTGCCCCACTTCTATGAATTGAAC  150

seq1  CCAAGATTTTGGACATGGCACACAGGTGTTCTACTACTGAGCCAAATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTTTGGACATGGCACACAGGTGTTCTACTACTGAGCCAAATCCC  200

seq1  CAGCCTGACCATATTTTAGAAAGTAAGACTATAGCTTTCTTCCTCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGACCATATTTTAGAAAGTAAGACTATAGCTTTCTTCCTCTTTGT  250

seq1  GGTGGAATGAAATAGCTAAGAAAAGAAGGAAAAAATACATATCTCAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATGAAATAGCTAAGAAAAGAAGGAAAAAATACATATCTCAGCTA  300

seq1  TTAGTAGAAACCAAATGTGTATGTCCCAAGTACTGATACATTGGTGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAAACCAAATGTGTATGTCCCAAGTACTGATACATTGGTGGTCC  350

seq1  AGTGTGAGGGTGAGCATGGGCCAGGACTGTCGAAGACATGGGATGTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGGGTGAGCATGGGCCAGGACTGTCGAAGACATGGGATGTGGGA  400

seq1  CAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTAT  450

seq1  CTGTCTGTCTGTCTGTCTGTC-TGTCTGTGTTT  482
      |||||||||||||||| |||| | | |||||||
seq2  CTGTCTGTCTGTCTGTTTGTCTTTTTTGTGTTT  483