BAC Information

Click to search

BAC

Clone NameB6Ng01-331F24
Chromosome15 (Build37)
Map Location 98,395,150 - 98,539,257
singlet/doubletdoublet
Overlap geneCcnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65
Upstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418
Downstream geneFkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331F24.bB6Ng01-331F24.g
ACCGA117756GA117757
length2561,122
definitionB6Ng01-331F24.b B6Ng01-331F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,539,002 - 98,539,257)(98,395,150 - 98,396,272)
sequence
aagacagctgaatttggacacctgacagcatccactgtcctaattctggg
ggctcggttgatactgccaaactcaattctcccctcccccatgtttcaca
gagaatgccctaggcaaaaaccaatgttgtctgaagcccatgtattttgg
gaccaaggacttcagagggataggaaaggatgaaaatgagcctgccacaa
ggacgcgaccccaggcaacggtaccagtgcatgggcggtgggtttggggg
tttggg
gaattcaatgtcctcacctagcctctgagggcactcacacactcttacca
ttccctaacccaaacacaggcaaaaataaagccaagtccttttttatcct
aaatttgaaacatgttttcttaaagacttttaaaaatgttgcaaaaccta
acttacatttgtcttcttactcggaaagctatatttaaatcatggtttct
tttctaactttaaaataacgagccctaaattctaaaattaaaatcatagt
tcaataacaacgaccaatcataaagtaggcagctacactcaaacccaaag
ggatttcaccatagaaaattatacttacatatcgatgaaactgtgtaaaa
gactgaatcatgtagaatcggtgcatgtatactatagcagtattgatcgt
cagttgtgagctgaagtgctcgagttaaggttcagaagcagacaatataa
tctccccccaaagtaacaaatggccaagctaaacagatgatcccacaggg
gagtaaaacttaactcttccaacccaacagcagattcgtttccttctcta
atgaaattaactgccaattgacaacatgtgctctacctaacgggtactta
atatgaacttactgactgaataaacaaaacaagtagcaagttgtaaatca
gtacaaacaaagctgcatacgacctcaggcttcctgtcctgtcacttgcc
ttctgcaaagacgatcctttagctcaggacaacttcatcacatttacttt
tggccatagcatgagtatggtggtcagagggcaacttgcaggagtcggtt
atcttcccacccgagtcccagggatggaattcaggctaccaggcttgacg
agaagtgcctttacccgctgggccattctgtcaggccaagaataacttta
aaattttaagtgtatcagcatttgcctgattctatgtatgtgcaccaagg
gcatgtctggtgcccacagaggtcagaggagggcatgagattaccctaca
ctgcagctatagacgactgtggggctgccatatagggcctgcctaacagt
aagtgcttgtacctgctgagccatctctctagccccaccaaaaatacttt
ttaaggaatatttacccaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98539002_98539257
seq2: B6Ng01-331F24.b_52_307 (reverse)

seq1  CCCAAACCCCCAAACCCACCGCCCATGCACTGGTACCGTTGCCTGGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCCCCAAACCCACCGCCCATGCACTGGTACCGTTGCCTGGGGTC  50

seq1  GCGTCCTTGTGGCAGGCTCATTTTCATCCTTTCCTATCCCTCTGAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCTTGTGGCAGGCTCATTTTCATCCTTTCCTATCCCTCTGAAGTCC  100

seq1  TTGGTCCCAAAATACATGGGCTTCAGACAACATTGGTTTTTGCCTAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCAAAATACATGGGCTTCAGACAACATTGGTTTTTGCCTAGGGC  150

seq1  ATTCTCTGTGAAACATGGGGGAGGGGAGAATTGAGTTTGGCAGTATCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTGAAACATGGGGGAGGGGAGAATTGAGTTTGGCAGTATCAAC  200

seq1  CGAGCCCCCAGAATTAGGACAGTGGATGCTGTCAGGTGTCCAAATTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCCCCAGAATTAGGACAGTGGATGCTGTCAGGTGTCCAAATTCAGC  250

seq1  TGTCTT  256
      ||||||
seq2  TGTCTT  256

seq1: chr15_98395150_98396272
seq2: B6Ng01-331F24.g_64_1185

seq1  GAATTCAATGTCCTCACCTAGCCTCTGAGGGCACTCACACACTCTTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCCTCACCTAGCCTCTGAGGGCACTCACACACTCTTACCA  50

seq1  TTCCCTAACCCAAACACAGGCAAAAATAAAGCCAAGTCCTTTTTTATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAACCCAAACACAGGCAAAAATAAAGCCAAGTCCTTTTTTATCCT  100

seq1  AAATTTGAAACATGTTTTCTTAAAGACTTTTAAAAATGTTGCAAAACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAAACATGTTTTCTTAAAGACTTTTAAAAATGTTGCAAAACCTA  150

seq1  ACTTACATTTGTCTTCTTACTCGGAAAGCTATATTTAAATCATGGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATTTGTCTTCTTACTCGGAAAGCTATATTTAAATCATGGTTTCT  200

seq1  TTTCTAACTTTAAAATAACGAGCCCTAAATTCTAAAATTAAAATCATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTTTAAAATAACGAGCCCTAAATTCTAAAATTAAAATCATAGT  250

seq1  TCAATAACAACGACCAATCATAAAGTAGGCAGCTACACTCAAACCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACAACGACCAATCATAAAGTAGGCAGCTACACTCAAACCCAAAG  300

seq1  GGATTTCACCATAGAAAATTATACTTACATATCGATGAAACTGTGTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCACCATAGAAAATTATACTTACATATCGATGAAACTGTGTAAAA  350

seq1  GACTGAATCATGTAGAATCGGTGCATGTATACTATAGCAGTATTGATCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATCATGTAGAATCGGTGCATGTATACTATAGCAGTATTGATCGT  400

seq1  CAGTTGTGAGCTGAAGTGCTCGAGTTAAGGTTCAGAAGCAGACAATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGAGCTGAAGTGCTCGAGTTAAGGTTCAGAAGCAGACAATATAA  450

seq1  TCTCCCCCCAAAGTAACAAATGGCCAAGCTAAACAGATGATCCCACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCCAAAGTAACAAATGGCCAAGCTAAACAGATGATCCCACAGGG  500

seq1  GAGTAAAACTTAACTCTTCCAACCCAACAGCAGATTCGTTTCCTTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAACTTAACTCTTCCAACCCAACAGCAGATTCGTTTCCTTCTCTA  550

seq1  ATGAAATTAACTGCCAATTGACAACATGTGCTCTACCTAACGGGTACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTAACTGCCAATTGACAACATGTGCTCTACCTAACGGGTACTTA  600

seq1  ATATGAACTTACTGACTGAATAAACAAAACAAGTAGCAAGTTGTAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACTTACTGACTGAATAAACAAAACAAGTAGCAAGTTGTAAATCA  650

seq1  GTACAAACAAAGCTGCATACGACCTCAGGCTTCCTGTCCTGTCACTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACAAAGCTGCATACGACCTCAGGCTTCCTGTCCTGTCACTTGCC  700

seq1  TTCTGCAAAGACGATCCTTTAGCTCAGGACAACTTCATCACATTTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAAGACGATCCTTTAGCTCAGGACAACTTCATCACATTTACTTT  750

seq1  TGGCCATAGCATGAGTATGGTGGTCAGAGGGCAACTTGCAGGAGTCGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAGCATGAGTATGGTGGTCAGAGGGCAACTTGCAGGAGTCGGTT  800

seq1  ATCTTCCCACCCGAGTCCCAGGGATGGAATTCAGGCTACCAGGCTTGACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCACCCGAGTCCCAGGGATGGAATTCAGGCTACCAGGCTTGACG  850

seq1  AGAAGTGCCTTTACCCGCTGGGCCATTCTGTCAGGCCAAGAATAACTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCCTTTACCCGCTGGGCCATTCTGTCAGGCCAAGAATAACTTTA  900

seq1  AAATTTTAAAGTGTATCAGCATTTGCCTGATTCTATGTATGTGCACCAAG  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTT-AAGTGTATCAGCATTTGCCTGATTCTATGTATGTGCACCAAG  949

seq1  GGCATGTCTGGTGCCCACAGAGGTCAGAAGAGGGCATGAGATTACCCTAC  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCATGTCTGGTGCCCACAGAGGTCAGAGGAGGGCATGAGATTACCCTAC  999

seq1  AACTGCAGCTATAGACGACTGT-GGGCTGCCATATAGGCCCTGCCTAAAC  1049
       ||||||||||||||||||||| ||||||||||||||| ||||||| |||
seq2  -ACTGCAGCTATAGACGACTGTGGGGCTGCCATATAGGGCCTGCCT-AAC  1047

seq1  AGTAAGTGCTTGTAACTGCTGAGCCATCTCTCTAGCCCCACAAAAAATAA  1099
      |||||||||||||| |||||||||||||||||||||||||| |||||| |
seq2  AGTAAGTGCTTGTACCTGCTGAGCCATCTCTCTAGCCCCACCAAAAAT-A  1096

seq1  CTTTTTAAGG-ATATTTA-CCAGGCC  1123
      |||||||||| ||||||| |||||||
seq2  CTTTTTAAGGAATATTTACCCAGGCC  1122