BAC Information

Click to search

BAC

Clone NameB6Ng01-331G06
Chromosome15 (Build37)
Map Location 24,026,878 - 24,144,584
singlet/doubletdoublet
Overlap geneLOC666989
Upstream geneLOC624863
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331G06.bB6Ng01-331G06.g
ACCGA117768GA117769
length1,1551,183
definitionB6Ng01-331G06.b B6Ng01-331G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,143,440 - 24,144,584)(24,026,878 - 24,028,057)
sequence
gaattccacactgtcaccagtgcagcatgccctctgccagcattggaaat
gtaaatgaaataaatacctaataaaaaaaaaaagtcaagtaaatccaaaa
aaaagtgtaaataagaaaactattgtattctttcaactgcaacttatgaa
caaaaagtactaagcatgaatattaatttaattaattcaaatatttgaaa
agtaacagaggagagcaaattatatttcttgaaccattctaggagattct
aaggtatttgttctctgaaaataatgtcagccattatgggccatttgcac
agagaagctgctaatggtgtatatgcagggtgtttaagaaaatgattgga
gttctagatggtcagtatttgctaacattggataatttattcggagatag
taagttgatctcaggtatttctatagagttttacaaaatttaattttgat
tcaatgtcttagttccagtaggactcatgatcttaagtactcctaaacaa
agatgggaagatagagagaaaagaaacattaatgaactaacaagtgatga
atcaggtgaataaatacatcaatgtcatccttcttctgatatggtgattt
ttttccactgactaaattgacgatgtaccttcttaaaagaaactttatta
ttgaggtccaagcacttaataaaaggtgttagtctgaggagcaaggcaaa
catctaacactgtcacttgtataaatttttattttatgttgactatgaac
aaaacaattctgatttgttttccttttctgctgggtcacttatatggtcc
tgtacaattatactataatcacaactagttttgtttgatattctactatc
tctctagctttataacaatatagaaactgctctagctactgagttatttt
ctgcattcaacttgtcttagtggaatattaaaatatggtcttttatcact
agacattgccaagttacaataataaaggaaatgaatgaaagatacggaaa
ccatgtctaagaagtaatattttgtgctaagaacaaatttccataataaa
tttaacagcctccttttcaataataagttcaaaattatctaaaacttgta
ttgaactacttacagttcaaacaatatttcttaaggatcttatgaaaaac
tattc

gaattcagtagctatgttcaagtcagctagaacagtcttgctcacaaaca
gctctatttcatgggacatttattatcacaacaactaaatatgccattac
ctcagcttggcaaacatgacagagtgccagctataaatattaataataat
ttaatttgcaaatatgtttccctgaatatatttgaatttatcaaacaaaa
ttttagctcaataaccaatgacaggatgtagatatttaatgtgaattctg
agtgaaattattataaaagcatctttacatccctaagccttttatgagat
atctcaagacaccacatatcattttaatttctacagagcgtttcccttgt
gtctgagaaaatatatgaaaatacagatggtttctcctgagtgcattttt
cttgatgagtgtttgacagcaatttcatttgtgtttaccttctttcatcg
ttctctactaggcaaaaaaataatgatgataataaaaatatgacattagt
ttccaaaattcatggatttagtataggaaaaaccctgtgctgtcacaata
gttgtgaatgatagggctaggctttccaggtttatatttgctattctgat
ttcagagatttaagtataaagatcacccatgtgatttgattatatgtgtt
ggccactatgtagacagacagacagacaggcaggcaggcaggcaggcagg
caggcagacagacagacagacagacagacagacagacagacagatagata
gatagatagatagataggcaggcaggcaggcaggcagacagacagacaga
cagacagatagatagatctacatgacacatggcatgtattagacttaagt
tatgtataaagatgcagagatgggttttggttaagaacagttgatgtttt
tgcagagacactgagtgctagtcttccactcaaactgaaaagatcataac
tgcctctaactcctgctctgagaaaccagtcactcctttccaaaccctac
atgcattagaatggacatgtgcatgtacacagatggcatataaaaataga
aaatgagtgcctaaaagagagagatatatggaaatatttatccatttttg
gcgcagttcaagcaagaacatagcacagtaaaacagaatttatttaaaga
tatctacatataattgcgacgttcttaatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_24143440_24144584
seq2: B6Ng01-331G06.b_46_1200 (reverse)

seq1  GAATAGGTTTTTCAT-AGATCCCTAAG-AATATTG-TTGAACTGTAAAGT  47
      ||||| ||||||||| |||||| |||| ||||||| ||||||||| ||||
seq2  GAATA-GTTTTTCATAAGATCCTTAAGAAATATTGTTTGAACTGT-AAGT  48

seq1  AGTTTCAATAC-AGTTTAAGGATAATTT--GACTTAT--ATGAAAAGGAG  92
      || |||||||| ||||| | ||||||||   ||||||   ||||||||||
seq2  AG-TTCAATACAAGTTTTA-GATAATTTTGAACTTATTATTGAAAAGGAG  96

seq1  GCTG-TAAATT--ATATGGAAATTTG-TCTTAGCAC-AAATATAAC-TCT  136
      |||| ||||||   |||||||||||| ||||||||| |||||| || |||
seq2  GCTGTTAAATTTATTATGGAAATTTGTTCTTAGCACAAAATATTACTTCT  146

seq1  TAGACATGGTTTCCGTATCTTTCATTCATTTCCTTTATTATTGTAACTTG  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGGTTTCCGTATCTTTCATTCATTTCCTTTATTATTGTAACTTG  196

seq1  GCAATGTCTAGTGATAAAAGACCATATTTTAATATTCCACTAAGACAAGT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTCTAGTGATAAAAGACCATATTTTAATATTCCACTAAGACAAGT  246

seq1  TGAATGCAGAAAATAACTCAGTAGCTAGAGCAGTTTCTATATTGTTATAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCAGAAAATAACTCAGTAGCTAGAGCAGTTTCTATATTGTTATAA  296

seq1  AGCTAGAGAGATAGTAGAATATCAAACAAAACTAGTTGTGATTATAGTAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAGATAGTAGAATATCAAACAAAACTAGTTGTGATTATAGTAT  346

seq1  AATTGTACAGGACCATATAAGTGACCCAGCAGAAAAGGAAAACAAATCAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACAGGACCATATAAGTGACCCAGCAGAAAAGGAAAACAAATCAG  396

seq1  AATTGTTTTGTTCATAGTCAACATAAAATAAAAATTTATACAAGTGACAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTGTTCATAGTCAACATAAAATAAAAATTTATACAAGTGACAG  446

seq1  TGTTAGATGTTTGCCTTGCTCCTCAGACTAACACCTTTTATTAAGTGCTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATGTTTGCCTTGCTCCTCAGACTAACACCTTTTATTAAGTGCTT  496

seq1  GGACCTCAATAATAAAGTTTCTTTTAAGAAGGTACATCGTCAATTTAGTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCAATAATAAAGTTTCTTTTAAGAAGGTACATCGTCAATTTAGTC  546

seq1  AGTGGAAAAAAATCACCATATCAGAAGAAGGATGACATTGATGTATTTAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAAAATCACCATATCAGAAGAAGGATGACATTGATGTATTTAT  596

seq1  TCACCTGATTCATCACTTGTTAGTTCATTAATGTTTCTTTTCTCTCTATC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGATTCATCACTTGTTAGTTCATTAATGTTTCTTTTCTCTCTATC  646

seq1  TTCCCATCTTTGTTTAGGAGTACTTAAGATCATGAGTCCTACTGGAACTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTTTGTTTAGGAGTACTTAAGATCATGAGTCCTACTGGAACTA  696

seq1  AGACATTGAATCAAAATTAAATTTTGTAAAACTCTATAGAAATACCTGAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGAATCAAAATTAAATTTTGTAAAACTCTATAGAAATACCTGAG  746

seq1  ATCAACTTACTATCTCCGAATAAATTATCCAATGTTAGCAAATACTGACC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTACTATCTCCGAATAAATTATCCAATGTTAGCAAATACTGACC  796

seq1  ATCTAGAACTCCAATCATTTTCTTAAACACCCTGCATATACACCATTAGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAACTCCAATCATTTTCTTAAACACCCTGCATATACACCATTAGC  846

seq1  AGCTTCTCTGTGCAAATGGCCCATAATGGCTGACATTATTTTCAGAGAAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTGTGCAAATGGCCCATAATGGCTGACATTATTTTCAGAGAAC  896

seq1  AAATACCTTAGAATCTCCTAGAATGGTTCAAGAAATATAATTTGCTCTCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTAGAATCTCCTAGAATGGTTCAAGAAATATAATTTGCTCTCC  946

seq1  TCTGTTACTTTTCAAATATTTGAATTAATTAAATTAATATTCATGCTTAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTTTTCAAATATTTGAATTAATTAAATTAATATTCATGCTTAG  996

seq1  TACTTTTTGTTCATAAGTTGCAGTTGAAAGAATACAATAGTTTTCTTATT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTGTTCATAAGTTGCAGTTGAAAGAATACAATAGTTTTCTTATT  1046

seq1  TACACTTTTTTTTGGATTTACTTGACTTTTTTTTTTTATTAGGTATTTAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTTTTTTGGATTTACTTGACTTTTTTTTTTTATTAGGTATTTAT  1096

seq1  TTCATTTACATTTCCAATGCTGGCAGAGGGCATGCTGCACTGGTGACAGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTACATTTCCAATGCTGGCAGAGGGCATGCTGCACTGGTGACAGT  1146

seq1  GTGGAATTC  1145
      |||||||||
seq2  GTGGAATTC  1155


seq1: chr15_24026878_24028057
seq2: B6Ng01-331G06.g_66_1248

seq1  GAATTCAGTAGCTATGTTCAAGTCAGCTAGAACAGTCTTGCTCACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGCTATGTTCAAGTCAGCTAGAACAGTCTTGCTCACAAACA  50

seq1  GCTCTATTTCATGGGACATTTATTATCACAACAACTAAATATGCCATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTTCATGGGACATTTATTATCACAACAACTAAATATGCCATTAC  100

seq1  CTCAGCTTGGCAAACATGACAGAGTGCCAGCTATAAATATTAATAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTGGCAAACATGACAGAGTGCCAGCTATAAATATTAATAATAAT  150

seq1  TTAATTTGCAAATATGTTTCCCTGAATATATTTGAATTTATCAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGCAAATATGTTTCCCTGAATATATTTGAATTTATCAAACAAAA  200

seq1  TTTTAGCTCAATAACCAATGACAGGATGTAGATATTTAATGTGAATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTCAATAACCAATGACAGGATGTAGATATTTAATGTGAATTCTG  250

seq1  AGTGAAATTATTATAAAAGCATCTTTACATCCCTAAGCCTTTTATGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTATTATAAAAGCATCTTTACATCCCTAAGCCTTTTATGAGAT  300

seq1  ATCTCAAGACACCACATATCATTTTAATTTCTACAGAGCGTTTCCCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGACACCACATATCATTTTAATTTCTACAGAGCGTTTCCCTTGT  350

seq1  GTCTGAGAAAATATATGAAAATACAGATGGTTTCTCCTGAGTGCATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGAAAATATATGAAAATACAGATGGTTTCTCCTGAGTGCATTTTT  400

seq1  CTTGATGAGTGTTTGACAGCAATTTCATTTGTGTTTACCTTCTTTCATCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGAGTGTTTGACAGCAATTTCATTTGTGTTTACCTTCTTTCATCG  450

seq1  TTCTCTACTAGGCAAAAAAATAATGATGATAATAAAAATATGACATTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACTAGGCAAAAAAATAATGATGATAATAAAAATATGACATTAGT  500

seq1  TTCCAAAATTCATGGATTTAGTATAGGAAAAACCCTGTGCTGTCACAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATTCATGGATTTAGTATAGGAAAAACCCTGTGCTGTCACAATA  550

seq1  GTTGTGAATGATAGGGCTAGGCTTTCCAGGTTTATATTTGCTATTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAATGATAGGGCTAGGCTTTCCAGGTTTATATTTGCTATTCTGAT  600

seq1  TTCAGAGATTTAAGTATAAAGATCACCCATGTGATTTGATTATATGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATTTAAGTATAAAGATCACCCATGTGATTTGATTATATGTGTT  650

seq1  GGCCACTATGTAGACAGACAGACAGACAGGCAGGCAGGCAGGCAGGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTATGTAGACAGACAGACAGACAGGCAGGCAGGCAGGCAGGCAGG  700

seq1  CAGGCAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATA  750

seq1  GATAGATAGATAGATAGGCAGGCAGGCAGGCAGGCAGACAGACAGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGGCAGGCAGGCAGGCAGGCAGACAGACAGACAGA  800

seq1  CAGACAGATAGATAGATCTACATGACACATGGCATGTATTAGACTTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATAGATAGATCTACATGACACATGGCATGTATTAGACTTAAGT  850

seq1  TATGTATAAAGATGCAGAGATGGGTTTTGGTTAAGAACAGTTGATGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAAAGATGCAGAGATGGGTTTTGGTTAAGAACAGTTGATGTTTT  900

seq1  TGCAGAGACACTGAGTGCTAGTCTTTCCACTCAAACTGAAAAGATCATAA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCAGAGACACTGAGTGCTAGTC-TTCCACTCAAACTGAAAAGATCATAA  949

seq1  CTGCCTCTAACTCCTGCTCTGAGAAACCAGTCACTCCTTTCCAAACCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTAACTCCTGCTCTGAGAAACCAGTCACTCCTTTCCAAACCCTA  999

seq1  CATGCATTAGAATGGACATGTGCATGTACACAGATGGGCATATAAAAATA  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGCATTAGAATGGACATGTGCATGTACACAGAT-GGCATATAAAAATA  1048

seq1  G-AAATGAGTGC--TAAAGAGAGAGATATAT-GAAATAATTTTATCCATT  1096
      | ||||||||||   |||||||||||||||| ||||||  ||||||||||
seq2  GAAAATGAGTGCCTAAAAGAGAGAGATATATGGAAATA--TTTATCCATT  1096

seq1  TTTGCCGCAGTCAAAAGCAAG-ACATAGCACAGTAAAACAGATATTTATT  1145
      |||| ||||||   ||||||| |||||||||||||||||||| ||||| |
seq2  TTTGGCGCAGT-TCAAGCAAGAACATAGCACAGTAAAACAGA-ATTTA-T  1143

seq1  TTAAATAT-TCTACATATA--TTCCATGT--TTAATTTAT  1180
      ||||| || ||||||||||  | | | ||  |||||||||
seq2  TTAAAGATATCTACATATAATTGCGACGTTCTTAATTTAT  1183


| Home | SequenceCutter | Blast | Download |