BAC Information

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BAC

Clone NameB6Ng01-332F10
Chromosome15 (Build37)
Map Location 47,109,216 - 47,110,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332F10.bB6Ng01-332F10.g
ACCGA118469GA118470
length1,1871,211
definitionB6Ng01-332F10.b B6Ng01-332F10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgttgacatgtaccccgtttttaattgggatatttgttgata
tttagtttcctgactaaaaccatttcttaaagaacctttcttttttccat
tgcatatttctagcttctttatcaaacatagggcatccataggtatgtgg
attgacagctggatctttgatttgtttccatccatcaatatgtcaatttt
tgttctagtattatgcattttctgtactactacagctctgtagtatagcg
tcaaataggaggcagtgatacctttacatttggtattgaatgagattgtt
ttacttatcctgacttttttgttgtccaagtagatttgagtacagtccct
ctaaatctgtaaagatttgtactgcaattttgcattgaatggtgaagatt
gcatggagtttgtagattactgttgttaagatggccagttttactacatt
aatcctactggtccatgagcatgggagatctcttccatcttttggtttct
tcttcaaagacttgaaatttttatcatataaatgtttcacttgcttggct
ggagttactcaaagagtgttatattattgtggctactttgaaggatgttt
gctccctgatttctttctcagccagtttgtcatttgtacatacaagagct
actgaatttttcacttcttttttttttcttttttctttcttctagccaat
gaatttaccatcaaaatattaaatctattcactaaattagagcgataaga
ttcagcagtattcatgacagtgctaggtttttaaagcatttacttgcaga
agtaggcattgaacattagaactcacacatatgagacaagtgcgagcatt
caattgccttaaaaggcaagatattctcatatttcacttttaaaatcaaa
tatgtcatgcatctttgcatctgcattttaacatagataagtaaagaaaa
tacagtggtcacatttacagaaagaaatcaatttagcatacatacataca
atttacatacatacacacacacactcacaacacatggacacacacctgca
taggcacataccaaatgcatacatactactgctttgctgtatgtagctgt
agtagaggcacaaacatgaatgaattgccctgaaatgagttcagaacggg
tgttgaatggtcatgaagtatgcaattaaacctagtt

gaattctcccagggacagagagaaatcgggggacgccctgtttcattctc
tctggcccctacaggagaaattctttaccccctatatgtattgtctaatg
ttcggttcaccaatcatgtcaattcatgtatgtcgtttgtttcattgtct
gaatgattgtgtcgttgtctgaatgactgttttatgtttcatgtttaaaa
ataaataaataaataaaacaaaaataaatggttaaaactttaccagctga
ttcactctcagtttgcacaaaggatgctgagagagagagccttcacttta
gccataaatcaagcacagcaagagaggccctgctagaaactgtttttaaa
gaaaaggaatctgcaacctcttagttctaagacaaataagctgatagttg
ttttttcctaaaaaattctctgcaagtttgtgatcattgtgtttagcaaa
taacaaattgcttttttatcttacaagtatagctataaaaggtaaaactc
tttaattgatctaaattcataagattcatgtaaccacttcatttggtttt
taattagtcttaaaggtataaatatgatctaacatgtcttggtcatagag
aattggtttataagttatttgggtataattaaaaggatgtaacactggtt
ataaagttaacttaaaagtagtaactcagagccagagtcattttcaaaca
aaagcacctggcataaaccagcccagagaactagtcctctaaagatactt
ctaaattgagataacattttgtgtaattcttatcctaaaagatagactta
taaagataagattttaaaacaatgtctctttaatgaaacattaaaattta
aactgtcatacattaatgaaaattttgtaacgtagtagtgatgtttttag
tattgattttaaggagaataaattgtttaaaatttgggtcttgctttcca
aaagttatagatatgttctaatattgcacagaaacttaaaattctggtta
aattgccagtgtccattgactgcagtttgcagtttaatcaaaagctttag
acttttactcacccatactagattatactagatatcacttataagagtgc
tatgctgcctcactggattcagccatacaaaacaaaagtaagtaacttga
aatttcatctgtgcagaattgaacctttcaccaattaaggttgacctata
tgacgtcgtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47109216_47110257
seq2: B6Ng01-332F10.b_207_1232

seq1  GATCTTTGATTTGTTTCCATCCATCAATATGTCAATTTTTGTTCTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGATTTGTTTCCATCCATCAATATGTCAATTTTTGTTCTAGTAT  50

seq1  TATGCATTTTCTGTACTACTACAGCTCTGTAGTATAGCGTCAAATAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTTTCTGTACTACTACAGCTCTGTAGTATAGCGTCAAATAGGAG  100

seq1  GCAGTGATACCTTTACATTTGGTATTGAATGAGATTGTTTTACTTATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATACCTTTACATTTGGTATTGAATGAGATTGTTTTACTTATCCT  150

seq1  GACTTTTTTGTTGTCCAAGTAGATTTGAGTACAGTCCCTCTAAATCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTGTTGTCCAAGTAGATTTGAGTACAGTCCCTCTAAATCTGTA  200

seq1  AAGATTTGTACTGCAATTTTGCATTGAATGGTGAAGATTGCATGGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGTACTGCAATTTTGCATTGAATGGTGAAGATTGCATGGAGTTT  250

seq1  GTAGATTACTGTTGTTAAGATGGCCAGTTTTACTACATTAATCCTACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTACTGTTGTTAAGATGGCCAGTTTTACTACATTAATCCTACTGG  300

seq1  TCCATGAGCATGGGAGATCTCTTCCATCTTTTGGTTTCTTCTTCAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGCATGGGAGATCTCTTCCATCTTTTGGTTTCTTCTTCAAAGAC  350

seq1  TTGAAATTTTTATCATATAAATGTTTCACTTGCTTGGCTGGAGTTACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTTTATCATATAAATGTTTCACTTGCTTGGCTGGAGTTACTCA  400

seq1  AAGAGTGTTATATTATTGTGGCTACTTTGAAGGATGTTTGCTCCCTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTTATATTATTGTGGCTACTTTGAAGGATGTTTGCTCCCTGATT  450

seq1  TCTTTCTCAGCCAGTTTGTCATTTGTACATACAAGAGCTACTGAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCAGCCAGTTTGTCATTTGTACATACAAGAGCTACTGAATTTTT  500

seq1  CACTTCTTTTTTTTTTCTTTTTTCTTTCTTCTAGCCAATGAATTTACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTTTTTTTTTCTTTTTTCTTTCTTCTAGCCAATGAATTTACCAT  550

seq1  CAAAATATTAAATCTATTCACTAAATTAGAGCGATAAGATTCAGCAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTAAATCTATTCACTAAATTAGAGCGATAAGATTCAGCAGTAT  600

seq1  TCATGACAGTGCTAGGTTTTTAAAGCATTTACTTGCAGAAGTAGGCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAGTGCTAGGTTTTTAAAGCATTTACTTGCAGAAGTAGGCATTG  650

seq1  AACATTAGAACTCACACATATGAGACAAGTGCGAGCATTCAATTGCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGAACTCACACATATGAGACAAGTGCGAGCATTCAATTGCCTTA  700

seq1  AAAGGCAAGATATTCTCATATTTCACTTTTAAAATCAAATATGTCATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAGATATTCTCATATTTCACTTTTAAAATCAAATATGTCATGCA  750

seq1  TCTTTGCATCTGCATTTTAACATAGATAAGTAAAGAAAATACAGTGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCATCTGCATTTTAACATAGATAAGTAAAGAAAATACAGTGGTCA  800

seq1  ACAATTTACAGAAAGAAAATCAAATTTAGCATACATACATACAAATTTAA  850
         |||||||||||| ||||| ||||||||||||||||||||||  || |
seq2  --CATTTACAGAAAG-AAATC-AATTTAGCATACATACATACAA--TTTA  844

seq1  CATACATACACACACACACTCAC-ACACATGGACACACACCTGCATAGGC  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATACATACACACACACACTCACAACACATGGACACACACCTGCATAGGC  894

seq1  ACATA-CACATGCATACATACTTACTTGCTTTGCCTGTATGTAAGCTGTA  948
      ||||| || |||||||||||| ||| ||||||| |||||||| |||||||
seq2  ACATACCAAATGCATACATAC-TAC-TGCTTTG-CTGTATGT-AGCTGTA  940

seq1  GGTAGAGGCCACAACATTGAATGATATGCCCTGAAAATGAAGTTTCAGAA  998
       ||||||| |||||   |||||||  ||||||| ||||||   |||||||
seq2  -GTAGAGG-CACAAACATGAATGAATTGCCCTG-AAATGA--GTTCAGAA  985

seq1  -AGGTGTTGAAGTGTCATGAAAGTGATGTGAATTAAACACTAGTT  1042
        |||||||||  |||||| |||| |||  |||||||| ||||||
seq2  CGGGTGTTGAATGGTCATG-AAGT-ATG-CAATTAAAC-CTAGTT  1026


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