BAC Information

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BAC

Clone NameB6Ng01-333D16
Chromosome15 (Build37)
Map Location 75,462,257 - 75,603,333
singlet/doubletdoublet
Overlap gene2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3
Upstream gene1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41
Downstream geneLOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D16.bB6Ng01-333D16.g
ACCGA119100GA119101
length1,1081,050
definitionB6Ng01-333D16.b B6Ng01-333D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,602,235 - 75,603,333)(75,462,257 - 75,463,295)
sequence
gaattcatttgttaatgctaacaattttttatgggttccttaggactttt
gaaacgtaagatctgtcatctgaaggcagacaaaatgttactgctcccgt
ctccatcaaaaggccttttgtttcttttcctcgcctagttgttctgtctg
gaaagtcagtctttggagtaaaggtggcaacagtggagccctcctctttt
ctgtcactgagtgctgccggccgtgggcttctgaggaagtgtggtgttgt
ggtttccaggtaatgctgaccttatgggagaggtttagaaatatgtcctt
cttgccagttaggaaagtttgagaaaaactactgctgattcgtcattaaa
agacgtagtagcacgctcaccatggggcctccagtctgtagtcgcaggct
ttctttcccgggggaggtatttctaactcagtgctctgtgtgagagagag
ttgatgtcagtaggttgtgtttctgggtgtgattgaaatattttctaatt
atatttgtggtgtccggcatctaatgagcaccccattcctgatacttagt
gtgttttctttctcacctgtgtggctggagttggcagatcccattggtct
tccacacgacagctctggctcactgattgttctgttggcgctggctcccc
ttttccatttcagtgctttgtgttcctctctttatgtatttctgcttgcc
tggcatttgttttgccctttcctcctctgggttcttgaggactgggaggg
ttcccctttgtctaagtgtgtttggttagctgtgtccctagcactgccct
gctgggctctcacgcagggctgcttgtctcagtgctgctgctttctgacc
cgggggatttacaagtgtactgcctgggttttcaggattctagaaatgtt
ttcttgtctttctgaccttgatttgatgccctcatagtaaagaatatact
tctgtgttaattttattctctctctgcccctatccctatctcgactggac
tcagacccatgctagataaaatgttcttactaaagtcacattgcatcccc
aactatttcatgttgtctttgggccctgtttgcttggttggattttggtt
ttggtttt
aaactacatcttagtctctggagttgggatctgaaggatggcagccagcc
agcggctttagagtcaagcagggttcacctgaaaggagggctggaaatga
aaggaccggggaccagggaagatgaagccaagacaagattctgatcaaag
tttaatattcagcacagcatatataaggggaaaccccacaaaacccatcc
ccaggacagtaattcgaggtagcaacagcacagcagctaatctgttaagt
ttccatttcttgccagctcattatttccagtacatcaaaacccgaagctg
cagccaaggcaggtgtctctgttcaggccgatgaagcctatctttcaagg
tctgtatatccatcctgtgcgttatggcaaatattcaaggtttgcttagc
caagatctgtccagcctgcctggcgaatgttcaaggtctgcttggcctat
acaggctagggatgccacaaaggatggcagcagtcctccgagacaggctc
cttttgcctccccacagctggtagccaagatagggaacctctgggtctac
aaagctgggtctgtaactcttgcagcggtccctcagtggccccttttatg
actttttagttctagaggctaggaggaggcatggtaagaggatatagtat
aagagtatggtcccaggacaccctttgatggaagggcaggaggtcagcat
gtagtgtctcatcaaccaggattggagaattttttaaatctctcaggcaa
cctgggtccaggtaagttgcctgctgtaacctccctcttggcccttggca
ctgtgaaagcacaagtgggttggctcacctctgcccatggggaggctgaa
gagcacagctgtcaggtgccaggcaaagtacaccttgcttcctctggaag
atcagattcgagagaagcaaaggttctcaggtttctttcacaggcaagga
gaggggtgttcttagggtgacttgacaggctccagatgctgggtttctta
accaggtaatggtggactgcagtttctcttgtgtttacagcattcattgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75602235_75603333
seq2: B6Ng01-333D16.b_46_1153 (reverse)

seq1  AAAACCAAAACCAAAA-CCAACCAAGCAAACA-GGCCCAAAGAC-ACATG  47
      |||||||||||||||| ||||||||||||||| ||||||||||| |||||
seq2  AAAACCAAAACCAAAATCCAACCAAGCAAACAGGGCCCAAAGACAACATG  50

seq1  -AATAGTTGGGGATGCAATGTGACTTTAGT-AGAACATTTTATCTAGCAT  95
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATAGTTGGGGATGCAATGTGACTTTAGTAAGAACATTTTATCTAGCAT  100

seq1  GGGTCTGAGTCCAGACGAGATAGGGATAGGGGCAGAGAGAGATTAAAATT  145
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GGGTCTGAGTCCAGTCGAGATAGGGATAGGGGCAGAGAGAGAATAAAATT  150

seq1  -ACACAG-AGTATATTCTTTACTATGAGGGCATCAAATCAAGGTCAGAAA  193
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAGTATATTCTTTACTATGAGGGCATCAAATCAAGGTCAGAAA  200

seq1  GACAAG-AAACATTTCTAGAATCCTGAAAA-CCAGGCAGTACACTTGTAA  241
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  GACAAGAAAACATTTCTAGAATCCTGAAAACCCAGGCAGTACACTTGTAA  250

seq1  ATCCCCCGGGTCAGAAAGCAGCAGCACTGAGACAAGCAGCCCTGCGTGAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCGGGTCAGAAAGCAGCAGCACTGAGACAAGCAGCCCTGCGTGAG  300

seq1  AGCCCAGCAGGGCAGTGCTAGGGACACAGCTAACCAAACACACTTAGACA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCAGGGCAGTGCTAGGGACACAGCTAACCAAACACACTTAGACA  350

seq1  AAGGGGAACCCTCCCAGTCCTCAAGAACCCAGAGGAGGAAAGGGCAAAAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAACCCTCCCAGTCCTCAAGAACCCAGAGGAGGAAAGGGCAAAAC  400

seq1  AAATGCCAGGCAAGCAGAAATACATAAAGAGAGGAACACAAAGCACTGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAGGCAAGCAGAAATACATAAAGAGAGGAACACAAAGCACTGAA  450

seq1  ATGGAAAAGGGGAGCCAGCGCCAACAGAACAATCAGTGAGCCAGAGCTGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGGGGAGCCAGCGCCAACAGAACAATCAGTGAGCCAGAGCTGT  500

seq1  CGTGTGGAAGACCAATGGGATCTGCCAACTCCAGCCACACAGGTGAGAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGAAGACCAATGGGATCTGCCAACTCCAGCCACACAGGTGAGAAA  550

seq1  GAAAACACACTAAGTATCAGGAATGGGGTGCTCATTAGATGCCGGACACC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACACTAAGTATCAGGAATGGGGTGCTCATTAGATGCCGGACACC  600

seq1  ACAAATATAATTAGAAAATATTTCAATCACACCCAGAAACACAACCTACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATAATTAGAAAATATTTCAATCACACCCAGAAACACAACCTACT  650

seq1  GACATCAACTCTCTCTCACACAGAGCACTGAGTTAGAAATACCTCCCCCG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAACTCTCTCTCACACAGAGCACTGAGTTAGAAATACCTCCCCCG  700

seq1  GGAAAGAAAGCCTGCGACTACAGACTGGAGGCCCCATGGTGAGCGTGCTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGCCTGCGACTACAGACTGGAGGCCCCATGGTGAGCGTGCTA  750

seq1  CTACGTCTTTTAATGACGAATCAGCAGTAGTTTTTCTCAAACTTTCCTAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTCTTTTAATGACGAATCAGCAGTAGTTTTTCTCAAACTTTCCTAA  800

seq1  CTGGCAAGAAGGACATATTTCTAAACCTCTCCCATAAGGTCAGCATTACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGAAGGACATATTTCTAAACCTCTCCCATAAGGTCAGCATTACC  850

seq1  TGGAAACCACAACACCACACTTCCTCAGAAGCCCACGGCCGGCAGCACTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCACAACACCACACTTCCTCAGAAGCCCACGGCCGGCAGCACTC  900

seq1  AGTGACAGAAAAGAGGAGGGCTCCACTGTTGCCACCTTTACTCCAAAGAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGAAAAGAGGAGGGCTCCACTGTTGCCACCTTTACTCCAAAGAC  950

seq1  TGACTTTCCAGACAGAACAACTAGGCGAGGAAAAGAAACAAAAGGCCTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCCAGACAGAACAACTAGGCGAGGAAAAGAAACAAAAGGCCTTT  1000

seq1  TGATGGAGACGGGAGCAGTAACATTTTGTCTGCCTTCAGATGACAGATCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGACGGGAGCAGTAACATTTTGTCTGCCTTCAGATGACAGATCT  1050

seq1  TACGTTTCAAAAGTCCTAAGGAACCCATAAAAAATTGTTAGCATTAACAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTCAAAAGTCCTAAGGAACCCATAAAAAATTGTTAGCATTAACAA  1100

seq1  ATGAATTC  1099
      ||||||||
seq2  ATGAATTC  1108

seq1: chr15_75462257_75463295
seq2: B6Ng01-333D16.g_73_1122

seq1  AAACTACATCTTAGTCTCTGGAGTTGGGATCTGAAGGATGGCAGCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACATCTTAGTCTCTGGAGTTGGGATCTGAAGGATGGCAGCCAGCC  50

seq1  AGCGGCTTTAGAGTCAAGCAGGGTTCACCTGAAAGGAGGGCTGGAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTTTAGAGTCAAGCAGGGTTCACCTGAAAGGAGGGCTGGAAATGA  100

seq1  AAGGACCGGGGACCAGGGAAGATGAAGCCAAGACAAGATTCTGATCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCGGGGACCAGGGAAGATGAAGCCAAGACAAGATTCTGATCAAAG  150

seq1  TTTAATATTCAGCACAGCATATATAAGGGGAAACCCCACAAAACCCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTCAGCACAGCATATATAAGGGGAAACCCCACAAAACCCATCC  200

seq1  CCAGGACAGTAATTCGAGGTAGCAACAGCACAGCAGCTAATCTGTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGTAATTCGAGGTAGCAACAGCACAGCAGCTAATCTGTTAAGT  250

seq1  TTCCATTTCTTGCCAGCTCATTATTTCCAGTACATCAAAACCCGAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCTTGCCAGCTCATTATTTCCAGTACATCAAAACCCGAAGCTG  300

seq1  CAGCCAAGGCAGGTGTCTCTGTTCAGGCCGATGAAGCCTATCTTTCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGGCAGGTGTCTCTGTTCAGGCCGATGAAGCCTATCTTTCAAGG  350

seq1  TCTGTATATCCATCCTGTGCGTTATGGCAAATATTCAAGGTTTGCTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATATCCATCCTGTGCGTTATGGCAAATATTCAAGGTTTGCTTAGC  400

seq1  CAAGATCTGTCCAGCCTGCCTGGCGAATGTTCAAGGTCTGCTTGGCCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTGTCCAGCCTGCCTGGCGAATGTTCAAGGTCTGCTTGGCCTAT  450

seq1  ACAGGCTAGGGATGCCACAAAGGATGGCAGCAGTCCTCCGAGACAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGGGATGCCACAAAGGATGGCAGCAGTCCTCCGAGACAGGCTC  500

seq1  CTTTTGCCTCCCCACAGCTGGTAGCCAAGATAGGGAACCTCTGGGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCTCCCCACAGCTGGTAGCCAAGATAGGGAACCTCTGGGTCTAC  550

seq1  AAAGCTGGGTCTGTAACTCTTGCAGCGGTCCCTCAGTGGCCCC-TTTATG  599
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGCTGGGTCTGTAACTCTTGCAGCGGTCCCTCAGTGGCCCCTTTTATG  600

seq1  ACTTTTTAGTTCTAGAGGCTAGGAGGAGGCATGGTAAGAGGATATAGTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAGTTCTAGAGGCTAGGAGGAGGCATGGTAAGAGGATATAGTAT  650

seq1  AAGAGTATGGTCCCAGGACA-CCTTTGATGGAAGGGCAGGAGGTCAGCAT  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGAGTATGGTCCCAGGACACCCTTTGATGGAAGGGCAGGAGGTCAGCAT  700

seq1  GTAGTGTCTCATCAACCAGGATTGGAGAA-TTTTTAAATCTCTCAGGCAA  747
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAGTGTCTCATCAACCAGGATTGGAGAATTTTTTAAATCTCTCAGGCAA  750

seq1  CCT-GGTCCAGGTAAGTTGCCTGCTGTAACCTCCCTC-TGGCCC-TGGCA  794
      ||| ||||||||||||||||||||||||||||||||| |||||| |||||
seq2  CCTGGGTCCAGGTAAGTTGCCTGCTGTAACCTCCCTCTTGGCCCTTGGCA  800

seq1  CTGTGAAAGCACAAGTGGGTTGGCTCACCTCTGCCCAT-GGGAGGCTGAA  843
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGTGAAAGCACAAGTGGGTTGGCTCACCTCTGCCCATGGGGAGGCTGAA  850

seq1  GAGCACAGCTGTCAGGTGCCAGGCAGAGCACACC-TGC-TCCTCTGGAAG  891
      ||||||||||||||||||||||||| || ||||| ||| |||||||||||
seq2  GAGCACAGCTGTCAGGTGCCAGGCAAAGTACACCTTGCTTCCTCTGGAAG  900

seq1  AATCAGACTCGAGAGAAGCAAAGG-TCCCAGGTTTC-TTCACAGGC-AGG  938
       |||||| |||||||||||||||| || |||||||| ||||||||| |||
seq2  -ATCAGATTCGAGAGAAGCAAAGGTTCTCAGGTTTCTTTCACAGGCAAGG  949

seq1  AGAGGGGTGTTC-TAGGGTGAC-TGACAGGGCCCCAGGATGCTGGGCTCT  986
      |||||||||||| ||||||||| ||||| ||| ||| ||||||||| | |
seq2  AGAGGGGTGTTCTTAGGGTGACTTGACA-GGCTCCA-GATGCTGGG-TTT  996

seq1  CTAAACCAGGTAGT-GTGGACTGCAGTTTCTCTTTGTGTTTCCAGCA-TC  1034
      || ||||||||| | ||||||||||||||||| |||||||| ||||| ||
seq2  CTTAACCAGGTAATGGTGGACTGCAGTTTCTC-TTGTGTTTACAGCATTC  1045

seq1  ATTGG  1039
      |||||
seq2  ATTGG  1050