BAC Information

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BAC

Clone NameB6Ng01-333I08
Chromosome15 (Build37)
Map Location 43,629,982 - 43,631,166
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo2, LOC675960, Eif3s6, Ttc35
Downstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333I08.bB6Ng01-333I08.g
ACCGA119298GA119299
length1,1771,153
definitionB6Ng01-333I08.b B6Ng01-333I08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagttcctccatctccgttcatacctggaagctgctatgttcc
caccatgatgacaatagactgaacctctgaacctgtaagccagccccaat
taattattgtcccttgtaagagttcccttggtcatggtgtctgttcacaa
ccgtaaaaccttatctaagacattcacacttaagataacaatgtgaccta
acccagtaggacagtcatcacaaaatttcaatcatcaacctatgtcctta
tggttccgtgtcttcccttcccacacatcacatactttgcctttataact
tttagaaccctaccatgagccccagtgattaattaaatattccagttggc
tgcatgtaactgaatactaattaaagagatataatgatgtttagaactct
tttgaatgtgtccagaattagcagtgtgctcacttgggacagaatcaacc
agttactctctcctgtttctgtcaccttctccttcatgctaacattcatt
atttctagctgaacacatggctatcttaacacttacgtatgattcatgac
taatttctggctgatggacataaatagaagtcccctatgtaatctgtggc
aagtttttttgtttgtttgtttgtttggttttttaagggaaaccttaaaa
tgttcatgtcttttctggttcttcattcttagtcataaattaaatgtgga
tgagattgctttattatatgacttactaagctttttattccaaagtcata
tatagcagaaaaggatgagaattatcaaggaatagagagaccatcttcag
atggatttattcttgaaaggggaaaaaacatctatcgtgttttaccacta
ttattttgaggtatttttctcatagctgaaattatgcctaaataattgaa
agggtatacagctgctacaacaatgacacaaactggttctgtctttctgg
ccccctgcccttactaatagtttctaaacatatgggtacctcattattgc
agacactactgaacatttattttagagtttagaaaaaaaaaaaagagaaa
gaaagagcaggtgattctgatgagaaaatgaaaagaactttctagaattc
cactggggatatctttgatgtctggcacattttgatattgtatttaatag
ctgggacattcccaacactttcacgta
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggagagctagagaaagtagccaaggagctaaagggatctgcaccctat
agtgacacatatgagctacagtaccccggagcctcttgacctctagctgc
atttatatcaaagatgctagtcgccatcactgaaagaagagcccatgact
gcaactttatatgccagtacaaggaatacaagggcaaaagggatgggtgg
cca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43629982_43631166
seq2: B6Ng01-333I08.b_49_1225 (reverse)

seq1  TACGTG-AAGTGTTGGG-ATGT-CCAGCTATTAAAATTAC-ATATCAAAA  46
      |||||| |||||||||| |||| ||||||||||||  ||| |||||||||
seq2  TACGTGAAAGTGTTGGGAATGTCCCAGCTATTAAA--TACAATATCAAAA  48

seq1  TGTGCCCAAGACATC-AAGATATCCCCAGT-GAATTCTAGAAAGTTCTTT  94
      ||||||  ||||||| |||||||||||||| |||||||||||||||| ||
seq2  TGTGCC--AGACATCAAAGATATCCCCAGTGGAATTCTAGAAAGTTC-TT  95

seq1  TTCATTTTCTCATTCAGGAATCACCTGCTTCTTTCTTTTCTTCTTTTTTT  144
      |||||||||||| ||| ||||||||||| |||||||    |||| |||||
seq2  TTCATTTTCTCA-TCA-GAATCACCTGC-TCTTTCT----TTCTCTTTTT  138

seq1  TTTTTTTCTAAACTCTAAAATAAATGTTCAGTAGTTGTTCTGCAATAATG  194
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TTTTTTTCTAAACTCTAAAATAAATGTTCAGTAGT--GTCTGCAATAATG  186

seq1  AGGTACCCATATGTTTAGAAACTATTTAGTAAGGGCAGGGGGCCAGAAAG  244
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGTACCCATATGTTTAGAAACTA-TTAGTAAGGGCAGGGGGCCAGAAAG  235

seq1  ACAGAACCAGTTTGTGTCATTGTTGTAGCAGCTGTATACCC-TTCAATTA  293
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAGAACCAGTTTGTGTCATTGTTGTAGCAGCTGTATACCCTTTCAATTA  285

seq1  TTTAGGCATAATTTCAGCTATGAGAAAAATACCTCAAAATAATAGTGGTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCATAATTTCAGCTATGAGAAAAATACCTCAAAATAATAGTGGTA  335

seq1  AAACACGATAGATGTTTTTTCCCCTTTCAAGAATAAATCCATCTGAAGAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGATAGATGTTTTTTCCCCTTTCAAGAATAAATCCATCTGAAGAT  385

seq1  GGTCTCTCTATTCCTTGATAATTCTCATCCTTTTCTGCTATATATGACTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTATTCCTTGATAATTCTCATCCTTTTCTGCTATATATGACTT  435

seq1  TGGAATAAAAAGCTTAGTAAGTCATATAATAAAGCAATCTCATCCACATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAAAAGCTTAGTAAGTCATATAATAAAGCAATCTCATCCACATT  485

seq1  TAATTTATGACTAAGAATGAAGAACCAGAAAAGACATGAACATTTTAAGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATGACTAAGAATGAAGAACCAGAAAAGACATGAACATTTTAAGG  535

seq1  TTTCCCTTAAAAAACCAAACAAACAAACAAACAAAAAAACTTGCCACAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTAAAAAACCAAACAAACAAACAAACAAAAAAACTTGCCACAGA  585

seq1  TTACATAGGGGACTTCTATTTATGTCCATCAGCCAGAAATTAGTCATGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGGGGACTTCTATTTATGTCCATCAGCCAGAAATTAGTCATGAA  635

seq1  TCATACGTAAGTGTTAAGATAGCCATGTGTTCAGCTAGAAATAATGAATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACGTAAGTGTTAAGATAGCCATGTGTTCAGCTAGAAATAATGAATG  685

seq1  TTAGCATGAAGGAGAAGGTGACAGAAACAGGAGAGAGTAACTGGTTGATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGAAGGAGAAGGTGACAGAAACAGGAGAGAGTAACTGGTTGATT  735

seq1  CTGTCCCAAGTGAGCACACTGCTAATTCTGGACACATTCAAAAGAGTTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCAAGTGAGCACACTGCTAATTCTGGACACATTCAAAAGAGTTCT  785

seq1  AAACATCATTATATCTCTTTAATTAGTATTCAGTTACATGCAGCCAACTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATTATATCTCTTTAATTAGTATTCAGTTACATGCAGCCAACTG  835

seq1  GAATATTTAATTAATCACTGGGGCTCATGGTAGGGTTCTAAAAGTTATAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTAATTAATCACTGGGGCTCATGGTAGGGTTCTAAAAGTTATAA  885

seq1  AGGCAAAGTATGTGATGTGTGGGAAGGGAAGACACGGAACCATAAGGACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGTATGTGATGTGTGGGAAGGGAAGACACGGAACCATAAGGACA  935

seq1  TAGGTTGATGATTGAAATTTTGTGATGACTGTCCTACTGGGTTAGGTCAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGATGATTGAAATTTTGTGATGACTGTCCTACTGGGTTAGGTCAC  985

seq1  ATTGTTATCTTAAGTGTGAATGTCTTAGATAAGGTTTTACGGTTGTGAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATCTTAAGTGTGAATGTCTTAGATAAGGTTTTACGGTTGTGAAC  1035

seq1  AGACACCATGACCAAGGGAACTCTTACAAGGGACAATAATTAATTGGGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATGACCAAGGGAACTCTTACAAGGGACAATAATTAATTGGGGC  1085

seq1  TGGCTTACAGGTTCAGAGGTTCAGTCTATTGTCATCATGGTGGGAACATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACAGGTTCAGAGGTTCAGTCTATTGTCATCATGGTGGGAACATA  1135

seq1  GCAGCTTCCAGGTATGAACGGAGATGGAGGAACTGAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCCAGGTATGAACGGAGATGGAGGAACTGAGAATTC  1177