BAC Information

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BAC

Clone NameB6Ng01-335F23
Chromosome15 (Build37)
Map Location 13,659,551 - 13,744,680
singlet/doubletdoublet
Overlap geneLOC666708
Upstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC674819, LOC100040024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335F23.bB6Ng01-335F23.g
ACCGA120624GA120625
length1,0881,065
definitionB6Ng01-335F23.b B6Ng01-335F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,743,596 - 13,744,680)(13,659,551 - 13,660,615)
sequence
gaattccctagctatctcaaagaggaagctacaccaggaaagtcacctgg
tcatgagtatatgaactactgatagccttctccttgaaagcaatctgtga
gtatggagagtatacattcatgataatggacaaaacataatttttcatga
taaaaattattacagaagaactataagtagaatactttgcataaaataag
ccaataaatgttaatacttttacaaactttaataaagaaaagttcattta
atgtaatcagagtatagtggaattcaccagaagaccaaaatgaacagtag
aaaaaaataaagtcaaaagtttaggtttagatagactacctttaagagaa
ttactgtaataaacctaattgaactagatcctgtactccttttttaagtc
tataatcctgcctgcattatcagaggcctgcctgatccagggacactaag
gtaggacttccccctaagctccccaaagccttgtctgttaggtctccttt
gggcacccaaagctgtaaactgttcctggtcctttgttctccatttgctg
actcatagcactcactgcctatattccttgaatcctaccttctccaagaa
caaccagataaaaacccaatcccccaatctcctgctttctaggttcccct
gggacactctcagcagtgaagggaacatggtgcagttgaccactgctgag
agtgtcccatgtcactctatttttcagcccacagaactttctgcattcct
ggaggctttccagcactaagaacaaccagatagctgaaagccagcacaag
aacacaactaagaggccatggcaacatggccctaccagaacccagctctc
ctacctcagaaagtcctggatgtcctaactaacctgaagcacaggaaatg
accttaaaccaatgttatgaagatagaggtatttaaacagggaattgaat
aacttccctttaaagagtacaagaaattcattcaaatgagcaaaggaaat
gataatattgttcaagacctgaaaatgggaatagaagccacacaaaaagc
accaattgtagggggaatccttggagatgtaaaatcct

gaattccaagtgctcttttatctcttctgggagctgcatcaatcaagggt
tatctttgcttcggaatgcttcataactctggcttagaattctgtgttgt
tgtcttgtgggctgatttactaaatgtcaccatcaagaataaatgagctc
tatccgagattaagaattaaagaaaagtgtagaagagaaatagaaaaagt
gtcgcaggatttacattccaaatatctaggaaaccctcatattttaagat
acatgttatttaaatgtattttaaaaatgcttttatgcatagaaatggct
ttgaatgagtttctggttacatttgatatttaaaataatttatgagtatt
gtgcaatttgaaaggtttacattgctagcattcaaggatattttagtttt
tgcttctgaaaaaaagtatttgtgcgtgtgtgttattttaaactctagtg
ctctttttttttcttttttctctttctttttctttctttctttttttttt
tttttttttttttgtgagcttcaagtgttcagttctatcaaaggagaatt
cccagcttctgttgtggctctactgattatgtagacttttatgttttcca
ggattgtattttcctttcctgagtatagtattgcatttttcttttcaatc
gattgcataatcattaagtaaaagtctatcgattatcactttcataagat
tgtgtggaaaatagggaaataattgataatcaatcctttttactatttaa
attaaaactagggccagagatatggctcagtcaatgaaggtatttgctac
taagcctgacaacctgaattctattcttagagcccaaattgttgaaggat
ttgaaggacagaaacaattctcacaagttgtcctgtgacctccatataca
taccatgatacctcttcactcttcacacaacagaaaaaaatatcacattt
ataggagaggaggtggggggttcaccaagagtgttacaccttagagccag
atagcagctgggaaggtcctagggaaatggccaatctgatcaggaactca
gaaatgtttggagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13743596_13744680
seq2: B6Ng01-335F23.b_46_1133 (reverse)

seq1  AGGATTTTCCATCTCC-AGGATTCCCCCTAC-ATTTGTGCTTTTTTGTGT  48
      |||||||| ||||||| |||||||||||||| ||| |||| |||||||||
seq2  AGGATTTTACATCTCCAAGGATTCCCCCTACAATTGGTGC-TTTTTGTGT  49

seq1  -GCTTCTATTTCCATTTTCAGGTCTTGAACAATATTATTCATTTCCTTTG  97
       ||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GGCTTCTATTCCCATTTTCAGGTCTTGAACAATATTA-TCATTTCCTTTG  98

seq1  CTCATTTGATTGATTTTCTTGTACTTCTTTAAGGG-AGTTATTC-ATTCC  145
      ||||||||| ||| |||||||||||  || ||||| |||||||| |||||
seq2  CTCATTTGAATGAATTTCTTGTACTCTTTAAAGGGAAGTTATTCAATTCC  148

seq1  CTGTTTAAATACCTCTATCTTCATAACATTGGTTTAAGGTCATTTTCCTG  195
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTTTAAATACCTCTATCTTCATAACATTGGTTTAAGGTCA-TTTCCTG  197

seq1  TGCTTCAGGTTAGTTAGGACATCCAGGACTTTCTGAGTTAGGAGAGCTGG  245
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCTTCAGGTTAGTTAGGACATCCAGGACTTTCTGAGGTAGGAGAGCTGG  247

seq1  GTTCTGGTAGGGCCATGTTGCCATGG-CTCTTAGTTGTGTTCTTGTGCTG  294
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTCTGGTAGGGCCATGTTGCCATGGCCTCTTAGTTGTGTTCTTGTGCTG  297

seq1  GCTTTCAGCTATCTGGTTGTTCTTAGTGCTGGAAAGCCTCCAGGAATGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGCTATCTGGTTGTTCTTAGTGCTGGAAAGCCTCCAGGAATGCA  347

seq1  GAAAGTTCTGTGGGCTGAAAAATAGAGTGACATGGGACACTCTCAGCAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCTGTGGGCTGAAAAATAGAGTGACATGGGACACTCTCAGCAGT  397

seq1  GGTCAACTGCACCATGTTCCCTTCACTGCTGAGAGTGTCCCAGGGGAACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTGCACCATGTTCCCTTCACTGCTGAGAGTGTCCCAGGGGAACC  447

seq1  TAGAAAGCAGGAGATTGGGGGATTGGGTTTTTATCTGGTTGTTCTTGGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCAGGAGATTGGGGGATTGGGTTTTTATCTGGTTGTTCTTGGAG  497

seq1  AAGGTAGGATTCAAGGAATATAGGCAGTGAGTGCTATGAGTCAGCAAATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGATTCAAGGAATATAGGCAGTGAGTGCTATGAGTCAGCAAATG  547

seq1  GAGAACAAAGGACCAGGAACAGTTTACAGCTTTGGGTGCCCAAAGGAGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAAGGACCAGGAACAGTTTACAGCTTTGGGTGCCCAAAGGAGAC  597

seq1  CTAACAGACAAGGCTTTGGGGAGCTTAGGGGGAAGTCCTACCTTAGTGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGACAAGGCTTTGGGGAGCTTAGGGGGAAGTCCTACCTTAGTGTC  647

seq1  CCTGGATCAGGCAGGCCTCTGATAATGCAGGCAGGATTATAGACTTAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCAGGCAGGCCTCTGATAATGCAGGCAGGATTATAGACTTAAAA  697

seq1  AAGGAGTACAGGATCTAGTTCAATTAGGTTTATTACAGTAATTCTCTTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTACAGGATCTAGTTCAATTAGGTTTATTACAGTAATTCTCTTAA  747

seq1  AGGTAGTCTATCTAAACCTAAACTTTTGACTTTATTTTTTTCTACTGTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCTATCTAAACCTAAACTTTTGACTTTATTTTTTTCTACTGTTC  797

seq1  ATTTTGGTCTTCTGGTGAATTCCACTATACTCTGATTACATTAAATGAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTCTTCTGGTGAATTCCACTATACTCTGATTACATTAAATGAAC  847

seq1  TTTTCTTTATTAAAGTTTGTAAAAGTATTAACATTTATTGGCTTATTTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATTAAAGTTTGTAAAAGTATTAACATTTATTGGCTTATTTTA  897

seq1  TGCAAAGTATTCTACTTATAGTTCTTCTGTAATAATTTTTATCATGAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTATTCTACTTATAGTTCTTCTGTAATAATTTTTATCATGAAAA  947

seq1  ATTATGTTTTGTCCATTATCATGAATGTATACTCTCCATACTCACAGATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTTGTCCATTATCATGAATGTATACTCTCCATACTCACAGATT  997

seq1  GCTTTCAAGGAGAAGGCTATCAGTAGTTCATATACTCATGACCAGGTGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGGAGAAGGCTATCAGTAGTTCATATACTCATGACCAGGTGAC  1047

seq1  TTTCCTGGTGTAGCTTCCTCTTTGAGATAGCTAGGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTGTAGCTTCCTCTTTGAGATAGCTAGGGAATTC  1088


seq1: chr15_13659551_13660615
seq2: B6Ng01-335F23.g_66_1130

seq1  GAATTCCAAGTGCTCTTTTATCTCTTCTGGGAGCTGCATCAATCAAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGCTCTTTTATCTCTTCTGGGAGCTGCATCAATCAAGGGT  50

seq1  TATCTTTGCTTCGGAATGCTTCATAACTCTGGCTTAGAATTCTGTGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGCTTCGGAATGCTTCATAACTCTGGCTTAGAATTCTGTGTTGT  100

seq1  TGTCTTGTGGGCTGATTTACTAAATGTCACCATCAAGAATAAATGAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTGGGCTGATTTACTAAATGTCACCATCAAGAATAAATGAGCTC  150

seq1  TATCCGAGATTAAGAATTAAAGAAAAGTGTAGAAGAGAAATAGAAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGAGATTAAGAATTAAAGAAAAGTGTAGAAGAGAAATAGAAAAAGT  200

seq1  GTCGCAGGATTTACATTCCAAATATCTAGGAAACCCTCATATTTTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAGGATTTACATTCCAAATATCTAGGAAACCCTCATATTTTAAGAT  250

seq1  ACATGTTATTTAAATGTATTTTAAAAATGCTTTTATGCATAGAAATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTATTTAAATGTATTTTAAAAATGCTTTTATGCATAGAAATGGCT  300

seq1  TTGAATGAGTTTCTGGTTACATTTGATATTTAAAATAATTTATGAGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAGTTTCTGGTTACATTTGATATTTAAAATAATTTATGAGTATT  350

seq1  GTGCAATTTGAAAGGTTTACATTGCTAGCATTCAAGGATATTTTAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTTGAAAGGTTTACATTGCTAGCATTCAAGGATATTTTAGTTTT  400

seq1  TGCTTCTGAAAAAAAGTATTTGTGCGTGTGTGTTATTTTAAACTCTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGAAAAAAAGTATTTGTGCGTGTGTGTTATTTTAAACTCTAGTG  450

seq1  CTCTTTTTTTTTCTTTTTTCTCTTTCTTTTTCTTTCTTTC-TTTTTTTTT  499
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCTTTTTTTTTCTTTTTTCTCTTTCTTTTTCTTTCTTTCTTTTTTTTTT  500

seq1  TTTTTTTTTTTTTGTGAGCTTCAAGTGTTCAGTTCTATCAAAGGAGAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGTGAGCTTCAAGTGTTCAGTTCTATCAAAGGAGAATT  550

seq1  CCCAGCTTCTGTTGTGGCTCTACTGATTATGTAGACTTTTATGTTTTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTCTGTTGTGGCTCTACTGATTATGTAGACTTTTATGTTTTCCA  600

seq1  GGATTGTATTTTCCTTTCCTGAGTATAGTATTGCATTTTTCTTTTCAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTATTTTCCTTTCCTGAGTATAGTATTGCATTTTTCTTTTCAATC  650

seq1  GATTGCATAATCATTAAGTAAAAGTCTATCGATTATCACTTTCATAAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATAATCATTAAGTAAAAGTCTATCGATTATCACTTTCATAAGAT  700

seq1  TGTGTGGAAAATAGGGAAATAATTGATAATCAATCCTTTTTACTATTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAAAATAGGGAAATAATTGATAATCAATCCTTTTTACTATTTAA  750

seq1  ATTAAAACTAGGGCCAGAGATATGGCTCAGTCAATGAAGGTATTTGCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTAGGGCCAGAGATATGGCTCAGTCAATGAAGGTATTTGCTAC  800

seq1  TAAGCCTGACAACCTGAATTCTATTCTTAGAGCCCAAATTGTTGAAGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGACAACCTGAATTCTATTCTTAGAGCCCAAATTGTTGAAGGAT  850

seq1  TTGAAGGACAGAAACAATTCTCACAAGTTGTCCTGTGACCTCCATATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGACAGAAACAATTCTCACAAGTTGTCCTGTGACCTCCATATACA  900

seq1  TACCATGATACCTCTTCACTCTTCACAACAACAGAAAAAAATAATCACAT  949
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TACCATGATACCTCTTCACTCTTCAC-ACAACAGAAAAAAAT-ATCACAT  948

seq1  TTATAGGAAGAGAGGTGGGGGG-TCACCAAGAGTG-TACACCTTTAGAG-  996
      ||||||||   ||||||||||| |||||||||||| |||||| |||||| 
seq2  TTATAGGAGAGGAGGTGGGGGGTTCACCAAGAGTGTTACACC-TTAGAGC  997

seq1  CAGATAGCAGCCTGGGAGGTCCTAGGGGAAATGGCAAATCAGTCCAGGAA  1046
      |||||||||||  || |||||||| |||||||||| |||| |  ||||||
seq2  CAGATAGCAGCTGGGAAGGTCCTA-GGGAAATGGCCAATCTGATCAGGAA  1046

seq1  CTCAGAAATGTTTGGAGTC  1065
      |||||||||||||||||||
seq2  CTCAGAAATGTTTGGAGTC  1065


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