BAC Information

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BAC

Clone NameB6Ng01-336I12
Chromosome15 (Build37)
Map Location 79,435,463 - 79,487,011
singlet/doubletdoublet
Overlap geneDmc1, 4933432B09Rik
Upstream genePscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17
Downstream genePgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336I12.bB6Ng01-336I12.g
ACCGA121425GA121426
length1,0861,044
definitionB6Ng01-336I12.b B6Ng01-336I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,485,933 - 79,487,011)(79,435,463 - 79,436,502)
sequence
gaattcagcccggagcgatgtgtgtattttaaacattcctctttagaaac
tactcagttgtcccattaggtgtgagtaatagcattcggctaaagctgga
agcttcctgacagcatcatcagagtctagaacatagtgtaattttccagc
cattctggggaatgggtaggaggacaaggagaagccctgagatgcacctg
cctcttctcatctcctgctgcttggcctgtgagggtaagagcaggaggca
agaaacggtactggcctggggtctgagtcagcctttccttccacccaacc
aacttggagcagtacaggggtcggagatggagggatatctgcaaccacag
ggccgcagagtagtgatcagagggagatatgaaggcagtttggttcaaca
ggactcagtagctggtgtccattcaaacttagaatctgaccctgaatagt
ttattttaggcatctttgtacacagcacaatttgtttaaaaaaaaaatcc
tggtgataaatagctcaatcccatgtgcatagcaaggcttaaggtaggat
atctcaaagtaacgtacaaagcaaagtacaggtgagatcttccataaaga
tgggttttatggataactgggaaaacaggctcaagataaggaagtcttct
ggaagactagtctatagacgactgaaacagacaaggtcaagaaagggtct
gggggaatctctgtggtctatggcctggtcacacagttagcactaaggtc
accatgctaatgaactaactataccagtgccttctgggtaagaaaacagg
ttatatacatttctccctttgagatttattttatgtatgtgagtacactg
ccactcccttcagacatacccagaagagggcatcagatcccattacagaa
aggttgtgagccaccatgtggttgctgggatttgaactcaaggcctctgg
aagagcagtcagtagtttttttggttttgggttttttgggtttttcaaga
cagggctttatatataaaacctctgtctattagatagaccatatatatgt
ctatatatagctctggctgtcctggtaactcactct
gaattctaacgccgacccagaacgcggaggccggcagcccgccctgtcgt
cgaacagctccgggcttggcgccaaatgagggccgcgggagcaagccccc
ttgatgggcggggcctggggctgtaggcggggctcgggctgtaggcgggg
cccagtgtgtgtgggcggggctcaggttgtgggggtggggctcgaggtta
gctagagaacctgagcaggcaaggaaaggctccctgcgggtcatcggtaa
atgtagcacaaaggagagcggagggtggggcaggggccctagtgagggct
gctgggaggatgcgggagtggggggtcttcgggtctccgaggttagcgag
ggcagtggtggaacatggactctgaggagagaggtttgggtatgagaaga
gagtctgggcatcccttgggcgaagggagttgctgagtcacggggagagc
cttggccgctgacaaggacaggagatgacgaccttggactgtgaggaggt
cgaacatgggggtccctttcctcctgcctggggccgctttcactccaagg
ttttcatacctagctgggtaacccagccttcccatccccccttctctcct
gactctgcatttgcggtcctctcttctgggatggagagtaattttttttt
tctccctaacgtggttctaaatggtctacagaaacacacgaggtttttag
ttctgtttatagaaaccccgggccagccatgatgccagcaaggcctctct
ctaaactgtttccttttccccttagatggaaactgacagttcagagtcat
gaaaaacttgaaagaccacctgcagaggttgctttaagtgtcttagatga
cccaccaatacgggcgacctctatatttctttttgaaccttttaaatgga
ataaatttccaaaaacagttgacatttttgaaggacagacctatctcccg
gtggatagttttttaaaaggctatagcttttcaaaatgcttactttacag
aatcattgcccgtcttctcgatggaattgttcacttgaaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79485933_79487011
seq2: B6Ng01-336I12.b_48_1133 (reverse)

seq1  AGAGTGAGTT-CCAGGACAGCCAGAGCTATATATAGACATATATAT-GTC  48
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  AGAGTGAGTTACCAGGACAGCCAGAGCTATATATAGACATATATATGGTC  50

seq1  TATCT-ATAGACAGAGGTTTTATATATAAA-CCCTGTCTTGAAAAAACCA  96
      ||||| |||||||||||||||||||||||| ||||||||||||||| |||
seq2  TATCTAATAGACAGAGGTTTTATATATAAAGCCCTGTCTTGAAAAACCCA  100

seq1  AAAAACCAAAAACC-AAAAAACTACTGACTGCTCTTCCAGAGGCCTTGAG  145
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAAAACCAAAAAAACTACTGACTGCTCTTCCAGAGGCCTTGAG  150

seq1  TTCAAATCCCAGCAACCACATGGTGGCTCACAACC-TTCTGTAATGGGAT  194
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCAAATCCCAGCAACCACATGGTGGCTCACAACCTTTCTGTAATGGGAT  200

seq1  CTGATGCCCTCTTCT-GGTATGTCTGAAGGGAGTGGCAGTGTACTCACAT  243
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCTTCTGGGTATGTCTGAAGGGAGTGGCAGTGTACTCACAT  250

seq1  ACATAAAATAAATCTCAAAGGGAGAAATGTATATAACCTGTTTTCTTACC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAAATCTCAAAGGGAGAAATGTATATAACCTGTTTTCTTACC  300

seq1  CAGAAGGCACTGGTATAGTTAGTTCATTAGCATGGTGACCTTAGTGCTAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCACTGGTATAGTTAGTTCATTAGCATGGTGACCTTAGTGCTAA  350

seq1  CTGTGTGACCAGGCCATAGACCACAGAGATTCCCCCAGACCCTTTCTTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGACCAGGCCATAGACCACAGAGATTCCCCCAGACCCTTTCTTGA  400

seq1  CCTTGTCTGTTTCAGTCGTCTATAGACTAGTCTTCCAGAAGACTTCCTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTGTTTCAGTCGTCTATAGACTAGTCTTCCAGAAGACTTCCTTA  450

seq1  TCTTGAGCCTGTTTTCCCAGTTATCCATAAAACCCATCTTTATGGAAGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCCTGTTTTCCCAGTTATCCATAAAACCCATCTTTATGGAAGAT  500

seq1  CTCACCTGTACTTTGCTTTGTACGTTACTTTGAGATATCCTACCTTAAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGTACTTTGCTTTGTACGTTACTTTGAGATATCCTACCTTAAGC  550

seq1  CTTGCTATGCACATGGGATTGAGCTATTTATCACCAGGATTTTTTTTTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATGCACATGGGATTGAGCTATTTATCACCAGGATTTTTTTTTTA  600

seq1  AACAAATTGTGCTGTGTACAAAGATGCCTAAAATAAACTATTCAGGGTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTGTGCTGTGTACAAAGATGCCTAAAATAAACTATTCAGGGTCA  650

seq1  GATTCTAAGTTTGAATGGACACCAGCTACTGAGTCCTGTTGAACCAAACT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAAGTTTGAATGGACACCAGCTACTGAGTCCTGTTGAACCAAACT  700

seq1  GCCTTCATATCTCCCTCTGATCACTACTCTGCGGCCCTGTGGTTGCAGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATATCTCCCTCTGATCACTACTCTGCGGCCCTGTGGTTGCAGAT  750

seq1  ATCCCTCCATCTCCGACCCCTGTACTGCTCCAAGTTGGTTGGGTGGAAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCATCTCCGACCCCTGTACTGCTCCAAGTTGGTTGGGTGGAAGG  800

seq1  AAAGGCTGACTCAGACCCCAGGCCAGTACCGTTTCTTGCCTCCTGCTCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGACTCAGACCCCAGGCCAGTACCGTTTCTTGCCTCCTGCTCTT  850

seq1  ACCCTCACAGGCCAAGCAGCAGGAGATGAGAAGAGGCAGGTGCATCTCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCACAGGCCAAGCAGCAGGAGATGAGAAGAGGCAGGTGCATCTCAG  900

seq1  GGCTTCTCCTTGTCCTCCTACCCATTCCCCAGAATGGCTGGAAAATTACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCCTTGTCCTCCTACCCATTCCCCAGAATGGCTGGAAAATTACA  950

seq1  CTATGTTCTAGACTCTGATGATGCTGTCAGGAAGCTTCCAGCTTTAGCCG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCTAGACTCTGATGATGCTGTCAGGAAGCTTCCAGCTTTAGCCG  1000

seq1  AATGCTATTACTCACACCTAATGGGACAACTGAGTAGTTTCTAAAGAGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATTACTCACACCTAATGGGACAACTGAGTAGTTTCTAAAGAGGA  1050

seq1  ATGTTTAAAATACACACATCGCTCCGGGCTGAATTC  1079
      ||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAAATACACACATCGCTCCGGGCTGAATTC  1086

seq1: chr15_79435463_79436502
seq2: B6Ng01-336I12.g_66_1109

seq1  GAATTCTAACGCCGACCCAGAACGCGGAGGCCGGCAGCCCGCCCTGTCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACGCCGACCCAGAACGCGGAGGCCGGCAGCCCGCCCTGTCGT  50

seq1  CGAACAGCTCCGGGCTTGGCGCCAAATGAGGGCCGCGGGAGCAAGCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAGCTCCGGGCTTGGCGCCAAATGAGGGCCGCGGGAGCAAGCCCCC  100

seq1  TTGATGGGCGGGGCCTGGGGCTGTAGGCGGGGCTCGGGCTGTAGGCGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGGCGGGGCCTGGGGCTGTAGGCGGGGCTCGGGCTGTAGGCGGGG  150

seq1  CCCAGTGTGTGTGGGCGGGGCTCAGGTTGTGGGGGTGGGGCTCGAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGTGTGGGCGGGGCTCAGGTTGTGGGGGTGGGGCTCGAGGTTA  200

seq1  GCTAGAGAACCTGAGCAGGCAAGGAAAGGCTCCCTGCGGGTCATCGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAACCTGAGCAGGCAAGGAAAGGCTCCCTGCGGGTCATCGGTAA  250

seq1  ATGTAGCACAAAGGAGAGCGGAGGGTGGGGCAGGGGCCCTAGTGAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCACAAAGGAGAGCGGAGGGTGGGGCAGGGGCCCTAGTGAGGGCT  300

seq1  GCTGGGAGGATGCGGGAGTGGGGGGTCTTCGGGTCTCCGAGGTTAGCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGGATGCGGGAGTGGGGGGTCTTCGGGTCTCCGAGGTTAGCGAG  350

seq1  GGCAGTGGTGGAACATGGACTCTGAGGAGAGAGGTTTGGGTATGAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGTGGAACATGGACTCTGAGGAGAGAGGTTTGGGTATGAGAAGA  400

seq1  GAGTCTGGGCATCCCTTGGGCGAAGGGAGTTGCTGAGTCACGGGGAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGGCATCCCTTGGGCGAAGGGAGTTGCTGAGTCACGGGGAGAGC  450

seq1  CTTGGCCGCTGACAAGGACAGGAGATGACGACCTTGGACTGTGAGGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCGCTGACAAGGACAGGAGATGACGACCTTGGACTGTGAGGAGGT  500

seq1  CGAACATGGGGGTCCCTTTCCTCCTGCCTGGGGCCGCTTTCACTCCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACATGGGGGTCCCTTTCCTCCTGCCTGGGGCCGCTTTCACTCCAAGG  550

seq1  TTTTCATACCTAGCTGGGTAACCCAGCCTTCCCATCCCCCCTTCTCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATACCTAGCTGGGTAACCCAGCCTTCCCATCCCCCCTTCTCTCCT  600

seq1  GACTCTGCATTTGCGGTCCTCTCTTCTGGGATGGAGAGTAATTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCATTTGCGGTCCTCTCTTCTGGGATGGAGAGTAATTTTTTTTT  650

seq1  TCTCCCTAACGTGGTTCTAAATGGTCTACAGAAACACACGAGG-TTTTAG  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCCCTAACGTGGTTCTAAATGGTCTACAGAAACACACGAGGTTTTTAG  700

seq1  TTCTGTTTATAGAAACCCCGGGCCAGCCATGATGCCAGCAAGGCCTCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTATAGAAACCCCGGGCCAGCCATGATGCCAGCAAGGCCTCTCT  750

seq1  CTAAACTGTTTCCTTTTCCCCTTAGATGGAAACTGACAGTTCAGAGTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGTTTCCTTTTCCCCTTAGATGGAAACTGACAGTTCAGAGTCAT  800

seq1  GAAAAACTTGAAAGACCACCTGCAGAGGTTGCTTTAAGTGTCTTAGATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTTGAAAGACCACCTGCAGAGGTTGCTTTAAGTGTCTTAGATGA  850

seq1  CCCACCAATACGGGCGACCTCTATA-TTCTTTTTGAACCTTTTAAATGGA  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCACCAATACGGGCGACCTCTATATTTCTTTTTGAACCTTTTAAATGGA  900

seq1  ATAAATT--CCAAAACAGTTGACA-TTTTGAAGGACAGACCTATCTCCC-  944
      |||||||  | ||||||||||||| |||||||||||||||||||||||| 
seq2  ATAAATTTCCAAAAACAGTTGACATTTTTGAAGGACAGACCTATCTCCCG  950

seq1  GTGGATAGTTTTTTAAAAGGCTATAGCTTTTCAAAATGCTTACTTTACAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGTTTTTTAAAAGGCTATAGCTTTTCAAAATGCTTACTTTACAG  1000

seq1  AATCATTGCCCGTCTTCTCGAATGGAAATTGTTCACTTGAAAAGGA  1040
      |||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AATCATTGCCCGTCTTCTCG-ATGG-AATTGTTCACTTGAAAAGGA  1044