BAC Information

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BAC

Clone NameB6Ng01-338I19
Chromosome15 (Build37)
Map Location 47,952,694 - 48,075,754
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338I19.bB6Ng01-338I19.g
ACCGA122818GA122819
length1,1881,082
definitionB6Ng01-338I19.b B6Ng01-338I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,952,694 - 47,953,894)(48,074,662 - 48,075,754)
sequence
gaattccatattaattacatcaaaaagacagaagtaacaactgctccatt
atgtgaatatgacagaaatattttaaaagattaatatacttagaattaat
aaaactatttaaaatgggcatttttacgttgctacataataatacatttt
cccgggagaaacaatatttaaagcttgttaaaatattaaattatccatgc
attttcacaacagtccccaaatattgccaccgtcactgcataaacattca
gcagcctgaggtgtcaacagctaaagttatgactggaagatttccagcaa
acaagcagcagcaatttatttaatatgtacttgattcaaagtccataata
tcagataccctgattatcccacctttgtcttgaatttgggaaatactctg
gtattcaacatttctttgtttagtatgtcaaaatatatgttttatttttt
ttctttagaaaccctcaatattttccttgatgcttcagtctgccatatgc
tgttgttgaaacaatacaagaaatttagatactgtgggagttttatattt
ccattatgtaaacacgcatactattaaaataaatatgtaaacaataacac
tgaatcatattcctttgcttaatgaattgttcaattggaaatgttatgat
agtttgagtgagaatggcccctttaggcattatgttttaaaaattgcttc
tcagatggtaaacttatttggagagttttaggaggtaaagtcttgctggt
ggaagtaggtcactgaaggcagcttctggtttcaaaggaatcacactgtc
tccagtatatatctatgtcatctacttatagatcaaaatgtgaattatca
acctttcctgcttttatacctttgcttagtcatcttggactctaaacctc
tgagaaaataaacccaaataaatgcttccttttatagtttaggacatatt
ctcatagccatagagaagcaacaatgataaattctatgaaagctctctct
gctgtaatgccttatatctacgttttccttttctcttcttagaggaagtc
ctgaatgtcactcactactctcttctcctttcattttcagtatattcttt
tctggatcaatgtcttttttttttttttttgaaactggattcttgtgtaa
gcctggaatctgaactcattgggagagcaggctggcct

gaattcaagaagaggtagaaagatatggaaatatgtcaagttaagaaaca
ttgactttggtcacatgagcatcagagagatgttggtgaaagggagagag
acatagaaggatggatgaattgactgcaaatgcccttatgttctattgtg
gtgaaagggacatgcctgtagaagttcatgatttttagtattggtcctca
gatggtgaactgtttagggaggttgtggaaccttttgggcatgaagccaa
gctggcatatttaaggttgtagggatgggcccttatgcaacagacaccat
gtactgagaaccaagtcagattgccatactttccgctatgatagacttta
tacatgttaaccaaaatgtacttctttccttctagttgtttctggctgga
atttggtcacagaaaaattagaataatcaacccatgtataaatgcaaata
ttaggttttatcttgggaacataagataatttcctttgctttttgacaca
actggttattattctagtagaaagatcttaaaaccttttttttcaaatgt
tattatatccaataaaaggctgcatagtaggcataggaaaagaaggatct
aaaatgacaaaggtcctgtttacagagaatttattatcaatagtaggatt
taaaaggagcaaggaattattttagttcttaataaattttgataattgga
gttcattgaatattattgtacacattaaccatgcattctacctttgaacc
atatcacttatggtccaaacatatatttgatacaaccagtatactggttc
aagggtatttgacacaaattatactaagtacatgggtatttgttagaaat
ggtagagaatcatttctgcaggaggaagcacctaggctgagtgttaaagt
tataattaattgtgtaatgtgaggttaatagaggatgacaagaaaacacc
atatagatgtagtaatatttaagacataactatcagagcagtaggtactt
taaaacattttgatattgaaatacgatgttgacttatttccatgactatt
tatggaaatattctttgtaattctgagcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47952694_47953894
seq2: B6Ng01-338I19.b_47_1234

seq1  GAATTCCATATTAATTACATCAAAAAGACAGAAGTAACAACTGCTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTAATTACATCAAAAAGACAGAAGTAACAACTGCTCCATT  50

seq1  ATGTGAATATGACAGAAATATTTTAAAAGATTAATATACTTAGAATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATATGACAGAAATATTTTAAAAGATTAATATACTTAGAATTAAT  100

seq1  AAAACTATTTAAAATGGGCATTTTTACGTTGCTACATAATAATACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTTAAAATGGGCATTTTTACGTTGCTACATAATAATACATTTT  150

seq1  CCCGGGAGAAACAATATTTAAAGCTTGTTAAAATATTAAATTATCCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGAGAAACAATATTTAAAGCTTGTTAAAATATTAAATTATCCATGC  200

seq1  ATTTTCACAACAGTCCCCAAATATTGCCACCGTCACTGCATAAACATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAACAGTCCCCAAATATTGCCACCGTCACTGCATAAACATTCA  250

seq1  GCAGCCTGAGGTGTCAACAGCTAAAGTTATGACTGGAAGATTTCCAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGAGGTGTCAACAGCTAAAGTTATGACTGGAAGATTTCCAGCAA  300

seq1  ACAAGCAGCAGCAATTTATTTAATATGTACTTGATTCAAAGTCCATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGCAGCAATTTATTTAATATGTACTTGATTCAAAGTCCATAATA  350

seq1  TCAGATACCCTGATTATCCCACCTTTGTCTTGAATTTGGGAAATACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACCCTGATTATCCCACCTTTGTCTTGAATTTGGGAAATACTCTG  400

seq1  GTATTCAACATTTCTTTGTTTAGTATGTCAAAATATATGTTTTATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAACATTTCTTTGTTTAGTATGTCAAAATATATGTTTTATTTTTT  450

seq1  TTCTTTAGAAACCCTCAATATTTTCCTTGATGCTTCAGTCTGCCATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAAACCCTCAATATTTTCCTTGATGCTTCAGTCTGCCATATGC  500

seq1  TGTTGTTGAAACAATACAAGAAATTTAGATACTGTGGGAGTTTTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGAAACAATACAAGAAATTTAGATACTGTGGGAGTTTTATATTT  550

seq1  CCATTATGTAAACACGCATACTATTAAAATAAATATGTAAACAATAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATGTAAACACGCATACTATTAAAATAAATATGTAAACAATAACAC  600

seq1  TGAATCATATTCCTTTGCTTAATGAATTGTTCAATTGGAAATGTTATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATATTCCTTTGCTTAATGAATTGTTCAATTGGAAATGTTATGAT  650

seq1  AGTTTGAGTGAGAATGGCCCCTTTAGGCATTATGTTTTAAAAATTGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGTGAGAATGGCCCCTTTAGGCATTATGTTTTAAAAATTGCTTC  700

seq1  TCAGATGGTAAACTTATTTGGAGAGTTTTAGGAGGTAAAGTCTTGCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGTAAACTTATTTGGAGAGTTTTAGGAGGTAAAGTCTTGCTGGT  750

seq1  GGAAGTAGGTCACTGAAGGCAGCTTCTGGTTTCAAAGGAATCACACTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGGTCACTGAAGGCAGCTTCTGGTTTCAAAGGAATCACACTGTC  800

seq1  TCCAGTATATATCTATGTCATCTACTTATAGATCAAAATGTGAATTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATATATCTATGTCATCTACTTATAGATCAAAATGTGAATTATCA  850

seq1  ACCTTTCCTGCTTTTATACCTTTGCTTAGTCATCTTGGACTCTAAACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTGCTTTTATACCTTTGCTTAGTCATCTTGGACTCTAAACCTC  900

seq1  TGAGAAAATAAACCCAAATAAATGCTTCCTTTTATAGTTTAGGACATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATAAACCCAAATAAATGCTTCCTTTTATAGTTTAGGACATATT  950

seq1  CTCATAGCCATAGAGAAGCAACAATGATAAATTCTATGAAAGCTCTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGCCATAGAGAAGCAACAATGATAAATTCTATGAAAGCTCTCTCT  1000

seq1  GCTGTAATGCCTTAATTATCTACGTTTTCCTTTTCTCTTCTTAGAGGAAG  1050
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GCTGTAATGCCTTA--TATCTACGTTTTCCTTTTCTCTTCTTAGAGGAAG  1048

seq1  TCCTGAATGTCACTCACTACTCTCTTCT-CTTTCATTTTCAGGTTATATT  1099
      |||||||||||||||||||||||||||| |||||||||||||  |||| |
seq2  TCCTGAATGTCACTCACTACTCTCTTCTCCTTTCATTTTCAG--TATA-T  1095

seq1  TCTTTTTCTGATCTATGTCTTTTTTTTTTTTTTTTTTTGAGACTGGGTTT  1149
      ||||||   |||| |||||   |||||||||||||||||| ||| || ||
seq2  TCTTTTCTGGATCAATGTC---TTTTTTTTTTTTTTTTGAAACT-GGATT  1141

seq1  CTCTGTGTAGCCCTGGTTATCCTGGAACTCACTTTGTAGAGCAGGCTGGC  1199
      || ||||||  |||||  |||   ||||||| || | |||||||||||||
seq2  CT-TGTGTAAGCCTGG-AATC--TGAACTCA-TTGGGAGAGCAGGCTGGC  1186

seq1  CT  1201
      ||
seq2  CT  1188


seq1: chr15_48074662_48075754
seq2: B6Ng01-338I19.g_65_1146 (reverse)

seq1  TAAGGCTCAGAATACAAAAGAATATTTCTAT-AATAGTCATTGAAAT-AG  48
      |||||||||||||   |||||||||||| || ||||||||| ||||| ||
seq2  TAAGGCTCAGAATTACAAAGAATATTTCCATAAATAGTCATGGAAATAAG  50

seq1  TCAACATCTGTATTTCAAATTATCAAAATTGTTTTTAAAGTACCTTACTG  98
      |||||||| |||||||||  |||||||||   |||||||||||| |||||
seq2  TCAACATC-GTATTTCAA--TATCAAAAT--GTTTTAAAGTACC-TACTG  94

seq1  CTCCTGATAGTTTATGTCTTTAAAATATTACTACATCTATATGGTGTTTT  148
      || ||||||| |||||||||  ||||||||||||||||||||||||||||
seq2  CT-CTGATAG-TTATGTCTT--AAATATTACTACATCTATATGGTGTTTT  140

seq1  CTTGTCATCCTCTATTAACCTCCACATTAACCACAATTAATTATAACTTT  198
      ||||||||||||||||||||| |||||||  |||||||||||||||||||
seq2  CTTGTCATCCTCTATTAACCT-CACATTA--CACAATTAATTATAACTTT  187

seq1  AACACTCAGCCTAGGTGCTTCCTCCTGCAGAAATGATTCTCTACCATTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAGCCTAGGTGCTTCCTCCTGCAGAAATGATTCTCTACCATTTC  237

seq1  TAACAAATACCCATGTACTTAGTATAATTTGTGTCAAATACCCTTGAACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATACCCATGTACTTAGTATAATTTGTGTCAAATACCCTTGAACC  287

seq1  AGTATACTGGTTGTATCAAATATATGTTTGGACCATAAGTGATATGGTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTGGTTGTATCAAATATATGTTTGGACCATAAGTGATATGGTTC  337

seq1  AAAGGTAGAATGCATGGTTAATGTGTACAATAATATTCAATGAACTCCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGAATGCATGGTTAATGTGTACAATAATATTCAATGAACTCCAA  387

seq1  TTATCAAAATTTATTAAGAACTAAAATAATTCCTTGCTCCTTTTAAATCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAATTTATTAAGAACTAAAATAATTCCTTGCTCCTTTTAAATCC  437

seq1  TACTATTGATAATAAATTCTCTGTAAACAGGACCTTTGTCATTTTAGATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGATAATAAATTCTCTGTAAACAGGACCTTTGTCATTTTAGATC  487

seq1  CTTCTTTTCCTATGCCTACTATGCAGCCTTTTATTGGATATAATAACATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCCTATGCCTACTATGCAGCCTTTTATTGGATATAATAACATT  537

seq1  TGAAAAAAAAGGTTTTAAGATCTTTCTACTAGAATAATAACCAGTTGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAGGTTTTAAGATCTTTCTACTAGAATAATAACCAGTTGTGT  587

seq1  CAAAAAGCAAAGGAAATTATCTTATGTTCCCAAGATAAAACCTAATATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCAAAGGAAATTATCTTATGTTCCCAAGATAAAACCTAATATTT  637

seq1  GCATTTATACATGGGTTGATTATTCTAATTTTTCTGTGACCAAATTCCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATACATGGGTTGATTATTCTAATTTTTCTGTGACCAAATTCCAG  687

seq1  CCAGAAACAACTAGAAGGAAAGAAGTACATTTTGGTTAACATGTATAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACAACTAGAAGGAAAGAAGTACATTTTGGTTAACATGTATAAAG  737

seq1  TCTATCATAGCGGAAAGTATGGCAATCTGACTTGGTTCTCAGTACATGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATAGCGGAAAGTATGGCAATCTGACTTGGTTCTCAGTACATGGT  787

seq1  GTCTGTTGCATAAGGGCCCATCCCTACAACCTTAAATATGCCAGCTTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGCATAAGGGCCCATCCCTACAACCTTAAATATGCCAGCTTGGC  837

seq1  TTCATGCCCAAAAGGTTCCACAACCTCCCTAAACAGTTCACCATCTGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCCAAAAGGTTCCACAACCTCCCTAAACAGTTCACCATCTGAGG  887

seq1  ACCAATACTAAAAATCATGAACTTCTACAGGCATGTCCCTTTCACCACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACTAAAAATCATGAACTTCTACAGGCATGTCCCTTTCACCACAA  937

seq1  TAGAACATAAGGGCATTTGCAGTCAATTCATCCATCCTTCTATGTCTCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATAAGGGCATTTGCAGTCAATTCATCCATCCTTCTATGTCTCTC  987

seq1  TCCCTTTCACCAACATCTCTCTGATGCTCATGTGACCAAAGTCAATGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCACCAACATCTCTCTGATGCTCATGTGACCAAAGTCAATGTTT  1037

seq1  CTTAACTTGACATATTTCCATATCTTTCTACCTCTTCTTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTGACATATTTCCATATCTTTCTACCTCTTCTTGAATTC  1082


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