BAC Information

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BAC

Clone NameB6Ng01-341A15
Chromosome15 (Build37)
Map Location 40,095,876 - 40,200,402
singlet/doubletdoublet
Overlap geneLOC670013
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341A15.bB6Ng01-341A15.g
ACCGA124550GA124551
length1,1521,121
definitionB6Ng01-341A15.b B6Ng01-341A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,095,876 - 40,096,946)(40,199,282 - 40,200,402)
sequence
gaattcttgggtatacagacaaatttgctggatcctactgtaattctgtc
tgtctctgtctctctctgtctgtctctgtgtctctgtctctgtctctgtc
ttgtctctgtctctgtctctgtctctctctctctctctctctctctctct
ctgtttggtatttcaaggcagggtttctctgtgtagccctggctgtcctg
gaactcactctgtagaccaggttggccttgaactcagaaatctgcctgcc
tctgcctcccaagtgctgggattaaaggcatgcaccaccactgcctggct
ctgtaattctctttttaattgagtgagaaatcactggcctgtttactata
ctgactggaccatccagactcccatcaacattgcactttttttaaaattt
cactacattcccttcaacaattattattgtattggtttatttttataaca
atcatgaccaatatttcaaagtaataatttattatagtttagatttatat
tttcccaattattaataatgtttaaaatattttatggactacttgttcat
atgtgtatcatatctagagacgcatctgcttaattcctttgcccatgaca
ggaattgtttttataaattacaacagttccctttgtcatgttttccaaaa
tcttagattcaatgtatagtttatttttttctttctctatgaatctgttt
ctgactttcctacttagaggtagtggcttcctttttttgtgtctcatcca
tatcctaatctcttaaaatattatggcagtacatgctaattattcaattc
gacaattgtgtttcttccctccagcacatggggtcaatgcctatgcctta
ctaacatttatactcataatattaatcaccatatttggcacatagtaggt
cctcaatgaatgcctactgataagtgattaagtcaaggtatcatctattt
gtagataaaatcctgaagtttacagatgattgtatattagaacatggctt
attagaagttaatagtcagttcttgtaaaagtactccctattttctctta
caaaataagtgctgatttttaactctgggaggaaaataaatcatctcatt
gccttgttactctcgagattcccaggtgaggcttgacggtttctatagct
cc

gaattcttcagttgtctttctgggatgcttccaaaaaacagtactaagga
ctaagattctggaacttcacttggctgggctttcttaaattctgtgattg
gcagctttggtgaggatggctatctacaccgagaatcctttttccttggg
attttgattgtaccgtctcattgtcacagggcttggagcttgaccctcaa
aagactgaagctatttctatatctcctccttctttgtgacctcatgatct
agtcatttgtatatttttctctatgtgtctctagctctccatatctctca
tcttagaatttttctctttaactctgcttctttgaattttatagaatact
gtttgggcatgttatacttccataacccccctctacaggctggtaaagac
ttggcaaggctggtagatatagatgttactagccaaggctagatcaatgg
ttcagtggttaagagcactggctgctcatcaagaggttccaacttcaact
ccaaccactcacatgagagctcacaatcatattcaactccagtccctagg
gatctgatgtcctgccctttggcctccaaaggtagcaggtatgcaagtgg
tacacagaaacacatgaaaacaaacacatctacaaaaagaaaaataaata
ttttaattggatatcattattctttgacaattaagaatgttcttttattt
ttggttgtgagcctagcctttaatggctcagccatttctccagcccaaga
atgttcttttcctctatctttaatagtttattttctctcttatcattttc
ttcatatagctgtggtaacttttctctcttgttttcactccttctttatt
actcctccctcccctccatatcatctatcttctcctattctttctatctt
ctcattttttaaaaaaaaaagaaaaatgaaaaaattgatatgaacttcta
gataattttatggctcacctacactctcctgtattttttgattttgattt
tcatttttttttattttctctaaaatatcttctcaattatatcattcatt
cttgacatttggactttaatatcctgctgcacctttaagaataatgctaa
gggcctcatttttcttgaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40095876_40096946
seq2: B6Ng01-341A15.b_142_1196

seq1  GTCTTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  TCTCTGTTTGGTATTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTGGTATTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTC  100

seq1  CTGGAACTCACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCTGCCT  150

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCTG  200

seq1  GCTCTGTAATTCTCTTTTTAATTGAGTGAGAAATCACTGGCCTGTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAATTCTCTTTTTAATTGAGTGAGAAATCACTGGCCTGTTTACT  250

seq1  ATACTGACTGGACCATCCAGACTCCCATCAACATTGCACTTTTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTGGACCATCCAGACTCCCATCAACATTGCACTTTTTTTAAAA  300

seq1  TTTCACTACATTCCCTTCAACAATTATTATTGTATTGGTTTATTTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTACATTCCCTTCAACAATTATTATTGTATTGGTTTATTTTTATA  350

seq1  ACAATCATGACCAATATTTCAAAGTAATAATTTATTATAGTTTAGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCATGACCAATATTTCAAAGTAATAATTTATTATAGTTTAGATTTA  400

seq1  TATTTTCCCAATTATTAATAATGTTTAAAATATTTTATGGACTACTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCAATTATTAATAATGTTTAAAATATTTTATGGACTACTTGTT  450

seq1  CATATGTGTATCATATCTAGAGACGCATCTGCTTAATTCCTTTGCCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTATCATATCTAGAGACGCATCTGCTTAATTCCTTTGCCCATG  500

seq1  ACAGGAATTGTTTTTATAAATTACAACAGTTCCCTTTGTCATGTTTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATTGTTTTTATAAATTACAACAGTTCCCTTTGTCATGTTTTCCA  550

seq1  AAATCTTAGATTCAATGTATAGTTTATTTTTTTCTTTCTCTATGAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAGATTCAATGTATAGTTTATTTTTTTCTTTCTCTATGAATCTG  600

seq1  TTTCTGACTTTCCTACTTAGAGGTAGTGGCTTCCTTTTTTTGTGTCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACTTTCCTACTTAGAGGTAGTGGCTTCCTTTTTTTGTGTCTCAT  650

seq1  CCATATCCTAATCTCTTAAAATATTATGGCAGTACATGCTAATTATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCTAATCTCTTAAAATATTATGGCAGTACATGCTAATTATTCAA  700

seq1  TTCGACAATTGTGTTTCTTCCCTCCAGCACATGGGGTCAATGCCTATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACAATTGTGTTTCTTCCCTCCAGCACATGGGGTCAATGCCTATGCC  750

seq1  TTACTAACATTTATACTCATAATATTAATCACCATATTTGGCACATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAACATTTATACTCATAATATTAATCACCATATTTGGCACATAGTA  800

seq1  GGTCCTCAATGAATGCCTACTGATAAGTGATTAAGTCAAGGTATCATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCAATGAATGCCTACTGATAAGTGATTAAGTCAAGGTATCATCTA  850

seq1  TTTGTAAGATAAAATCCTGAAGTTTACAGATGATTGTATATTAAGAACAT  900
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGT-AGATAAAATCCTGAAGTTTACAGATGATTGTATATT-AGAACAT  898

seq1  GGCTTATTAGAAAGTTAATAAGTCAGTTCTGTTAAAAGTACTCCCTATTT  950
      |||||||||| |||||||| ||||||||||  ||||||||||||||||||
seq2  GGCTTATTAG-AAGTTAAT-AGTCAGTTCTTGTAAAAGTACTCCCTATTT  946

seq1  TCTCCTTACCAAAAATAAGTGCTGATTTTTAACTCT-GGAGGAACATTAA  999
      ||| |||||  ||||||||||||||||||||||||| ||||||| ||  |
seq2  TCT-CTTAC--AAAATAAGTGCTGATTTTTAACTCTGGGAGGAAAAT--A  991

seq1  AATCATCTCATTGCCTGGTTTACTCTCAGAGA-TGCCAGGTGAGGTCTTG  1048
      |||||||||||||||| | |||||||| |||| | |||||||||| ||||
seq2  AATCATCTCATTGCCTTG-TTACTCTC-GAGATTCCCAGGTGAGG-CTTG  1038

seq1  GAACGGTGTTTTCTAATAGCTCC  1071
        ||||   ||||| ||||||||
seq2  --ACGG---TTTCT-ATAGCTCC  1055


seq1: chr15_40199282_40200402
seq2: B6Ng01-341A15.g_66_1186 (reverse)

seq1  TATTCA--GAAAATGA-GCCCTTAGCATTTATTCTTTAAAGTGCAAGCA-  46
      ||||||   ||||||| |||||||||| |||||||| || |||| |||| 
seq2  TATTCAAGAAAAATGAGGCCCTTAGCA-TTATTCTTAAAGGTGC-AGCAG  48

seq1  GATATTAAAAGTCC-AATGTCAAG-ATGAATGATATAATTGAGAAGATAT  94
      |||||| ||||||| ||||||||| |||||||||||||||||||||||||
seq2  GATATT-AAAGTCCAAATGTCAAGAATGAATGATATAATTGAGAAGATAT  97

seq1  TTTAGAAGAAAAT-AAAAAAAATGAAAATTCAAAATCAAAAAAATACAGG  143
      ||||| ||||||| |||||||||||||| |||||||| ||||||||||||
seq2  TTTAG-AGAAAATAAAAAAAAATGAAAA-TCAAAATC-AAAAAATACAGG  144

seq1  AGAGTGTAGGTGAGCCATAAAATTATTCTAGAAGTTCATATCAATTTTTT  193
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAGTGTAGGTGAGCCATAAAATTA-TCTAGAAGTTCATATCAATTTTTT  193

seq1  CATTTTTCTTTTTTTTTTAAAAAATGAGAAGATAGAAAGAATAGGAGAAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTTTTTTTTTAAAAAATGAGAAGATAGAAAGAATAGGAGAAG  243

seq1  ATAGATGATATGGAGGGGAGGGAGGAGTAATAAAGAAGGAGTGAAAACAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGATATGGAGGGGAGGGAGGAGTAATAAAGAAGGAGTGAAAACAA  293

seq1  GAGAGAAAAGTTACCACAGCTATATGAAGAAAATGATAAGAGAGAAAATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAGTTACCACAGCTATATGAAGAAAATGATAAGAGAGAAAATA  343

seq1  AACTATTAAAGATAGAGGAAAAGAACATTCTTGGGCTGGAGAAATGGCTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTAAAGATAGAGGAAAAGAACATTCTTGGGCTGGAGAAATGGCTG  393

seq1  AGCCATTAAAGGCTAGGCTCACAACCAAAAATAAAAGAACATTCTTAATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTAAAGGCTAGGCTCACAACCAAAAATAAAAGAACATTCTTAATT  443

seq1  GTCAAAGAATAATGATATCCAATTAAAATATTTATTTTTCTTTTTGTAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAATAATGATATCCAATTAAAATATTTATTTTTCTTTTTGTAGA  493

seq1  TGTGTTTGTTTTCATGTGTTTCTGTGTACCACTTGCATACCTGCTACCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTTTTCATGTGTTTCTGTGTACCACTTGCATACCTGCTACCTT  543

seq1  TGGAGGCCAAAGGGCAGGACATCAGATCCCTAGGGACTGGAGTTGAATAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAAAGGGCAGGACATCAGATCCCTAGGGACTGGAGTTGAATAT  593

seq1  GATTGTGAGCTCTCATGTGAGTGGTTGGAGTTGAAGTTGGAACCTCTTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGAGCTCTCATGTGAGTGGTTGGAGTTGAAGTTGGAACCTCTTGA  643

seq1  TGAGCAGCCAGTGCTCTTAACCACTGAACCATTGATCTAGCCTTGGCTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCAGTGCTCTTAACCACTGAACCATTGATCTAGCCTTGGCTAG  693

seq1  TAACATCTATATCTACCAGCCTTGCCAAGTCTTTACCAGCCTGTAGAGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTATATCTACCAGCCTTGCCAAGTCTTTACCAGCCTGTAGAGGG  743

seq1  GGGTTATGGAAGTATAACATGCCCAAACAGTATTCTATAAAATTCAAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATGGAAGTATAACATGCCCAAACAGTATTCTATAAAATTCAAAGA  793

seq1  AGCAGAGTTAAAGAGAAAAATTCTAAGATGAGAGATATGGAGAGCTAGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTTAAAGAGAAAAATTCTAAGATGAGAGATATGGAGAGCTAGAG  843

seq1  ACACATAGAGAAAAATATACAAATGACTAGATCATGAGGTCACAAAGAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGAGAAAAATATACAAATGACTAGATCATGAGGTCACAAAGAAG  893

seq1  GAGGAGATATAGAAATAGCTTCAGTCTTTTGAGGGTCAAGCTCCAAGCCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATATAGAAATAGCTTCAGTCTTTTGAGGGTCAAGCTCCAAGCCC  943

seq1  TGTGACAATGAGACGGTACAATCAAAATCCCAAGGAAAAAGGATTCTCGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAATGAGACGGTACAATCAAAATCCCAAGGAAAAAGGATTCTCGG  993

seq1  TGTAGATAGCCATCCTCACCAAAGCTGCCAATCACAGAATTTAAGAAAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATAGCCATCCTCACCAAAGCTGCCAATCACAGAATTTAAGAAAGC  1043

seq1  CCAGCCAAGTGAAGTTCCAGAATCTTAGTCCTTAGTACTGTTTTTTGGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAGTGAAGTTCCAGAATCTTAGTCCTTAGTACTGTTTTTTGGAA  1093

seq1  GCATCCCAGAAAGACAACTGAAGAATTC  1121
      ||||||||||||||||||||||||||||
seq2  GCATCCCAGAAAGACAACTGAAGAATTC  1121


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