BAC Information

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BAC

Clone NameB6Ng01-344M11
Chromosome15 (Build37)
Map Location 42,307,201 - 42,446,169
singlet/doubletdoublet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344M11.bB6Ng01-344M11.g
ACCGA127175GA127176
length1,1151,189
definitionB6Ng01-344M11.b B6Ng01-344M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,307,201 - 42,308,325)(42,444,964 - 42,446,169)
sequence
gaattctgttttttatttatgttctttgacagttactggaaaatgaatga
catccaattaattgtacatagatggatgtttaatggacgaatgcagtgga
gggtctctaaaagagataggatagcaagatgttgcttaattacttccaag
tttactttaagcattggtcaacatgaagaatgggatgttctccccacttg
cattcaagtatctatgagagctcattctttcactattgtatgataagaca
ggctacaatcctttcatgttaacaggagcaataattctgtaaatacctgg
agttggcctgctctctgacatcttgggactttggaagatcactctaatat
gttcttatgtacagaggggaaatgtgaaaacagcatataatttgtacaac
aagcatgcctgagcacatccaagaaacagaagaaaacaaaagtttatgta
ataaacagatccgaggtactgaggttagaggaatgtctgcagaatattgg
tttcattgtccatggatcatcctaaaaatagaatccctcaggtaacagaa
aaagagtagatgacatgcacgcatgcatgtgtgcgtgtgtgtgtgtatga
gagagagagagagaatgtgtatccaatgtgtattgtgttcaaaaactcac
aaatttgtttgattatatagcaattcaaccaggatctgctttccatccca
taaacaagcacttctgatcttacctttttgggttctggcatattattaaa
ataaatagtgtagattccacttttattaaaaccagcttgatatacatctg
cacagtctcgaaatggtttctcttcttctctttttcctccctttagcaaa
actgcaaatttaaagagagaaactttaatatataaataagaacttcagta
ttattaccacccaatggattacaaacatagcagtcttcgttgtctgactt
atatccacactgtatatattaaaactaaaacatacccacctaccaaataa
ctggtaaggttaaaattgaagagaaaaccctgtggaatcaattccaatta
catagtatcttatataataatttattttgggtttttctatatcctcaaac
tcatcctgttggaca

gaattcttgtgtgaattctgagaggagatgaaattatttatttatttgct
tcaaaaccttcatcactatcttcacttatacagtgttattttctttcatt
gaaaagcttgcctctgtttttcacccttctccacttggcacactggtgaa
ctcttggtgacatggatcctatactgaaaagagtagagttttattattcc
tgctaagctccttgatggcttcaggatcttggcatcgagggaaaatctcc
tgtcatttgttattgttgtacccctttattcttttcttctctgagtgctg
tgtttattttaaggacaaggacaaatattgggatttggtagaatatcctg
ccaagagaaagcacatgcaaaacataaaaatcctggaaacatttgaagac
tcctcctcctcaaactgaaagccagggaaggaagcagggtggaaaagagc
agcacacaagcagggaaaggaagaagggaaaggaaatgtcaccagacctg
ttctagaatggacttgatggtcactttcactttttgccatttgtcttcat
cttcatttggatactttgagccagatatataatcccatcaatgacattga
gagttccaggtcagccagaactacagagcaagttagaagagacctcatct
taaaaaaacatcatataaactcttttgagtatgatgtctttcttagaagc
ataaaatagtacagaaatttacacaatcttggtccccacccacagcctct
gtttaaggactttctggtaatatagttgctttttctgtctttaatttatt
taccttagacatgtgtgttgatggcggctcatttaccctgacttccaagt
tgcccccagtgcaggactgttttatgtcctagttggaaatatgtcctcca
ggcctgttgttgtagagagctctgtgtgtagcaagaggctggtctcaccg
agacagtgattctgtatttgcttccttttgtaattacccagatgctactt
tccagtctatagttgtatttcattgtcttccaaatgatgtactgtacttt
attatgcatgccacaattgttttattttctagaggaattctcaagtggcc
ataaggttcagtacatttatgctgattattatgtgattaatctgaaagac
ctggcaaggatgccaatggttggtctcaggtaacctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42307201_42308325
seq2: B6Ng01-344M11.b_50_1164

seq1  GAATTCTGTTTTTTATTTATGTTCTTTGACAGTTACTGGAAAATGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTTTATTTATGTTCTTTGACAGTTACTGGAAAATGAATGA  50

seq1  CATCCAATTAATTGTACATAGATGGATGTTTAATGGACGAATGCAGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATTAATTGTACATAGATGGATGTTTAATGGACGAATGCAGTGGA  100

seq1  GGGTCTCTAAAAGAGATAGGATAGCAAGATGTTGCTTAATTACTTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTAAAAGAGATAGGATAGCAAGATGTTGCTTAATTACTTCCAAG  150

seq1  TTTACTTTAAGCATTGGTCAACATGAAGAATGGGATGTTCTCCCCACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTAAGCATTGGTCAACATGAAGAATGGGATGTTCTCCCCACTTG  200

seq1  CATTCAAGTATCTATGAGAGCTCATTCTTTCACTATTGTATGATAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGTATCTATGAGAGCTCATTCTTTCACTATTGTATGATAAGACA  250

seq1  GGCTACAATCCTTTCATGTTAACAGGAGCAATAATTCTGTAAATACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAATCCTTTCATGTTAACAGGAGCAATAATTCTGTAAATACCTGG  300

seq1  AGTTGGCCTGCTCTCTGACATCTTGGGACTTTGGAAGATCACTCTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCTGCTCTCTGACATCTTGGGACTTTGGAAGATCACTCTAATAT  350

seq1  GTTCTTATGTACAGAGGGGAAATGTGAAAACAGCATATAATTTGTACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATGTACAGAGGGGAAATGTGAAAACAGCATATAATTTGTACAAC  400

seq1  AAGCATGCCTGAGCACATCCAAGAAACAGAAGAAAACAAAAGTTTATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCCTGAGCACATCCAAGAAACAGAAGAAAACAAAAGTTTATGTA  450

seq1  ATAAACAGATCCGAGGTACTGAGGTTAGAGGAATGTCTGCAGAATATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGATCCGAGGTACTGAGGTTAGAGGAATGTCTGCAGAATATTGG  500

seq1  TTTCATTGTCCATGGATCATCCTAAAAATAGAATCCCTCAGGTAACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTCCATGGATCATCCTAAAAATAGAATCCCTCAGGTAACAGAA  550

seq1  AAAGAGTAGATGACATGCACGCATGCATGTGTGCGTGTGTGTGTGTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAGATGACATGCACGCATGCATGTGTGCGTGTGTGTGTGTATGA  600

seq1  GAGAGAGAGAGAGAATGTGTATCCAATGTGTATTGTGTTCAAAAACTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAATGTGTATCCAATGTGTATTGTGTTCAAAAACTCAC  650

seq1  AAATTTGTTTGATTATATAGCAATTCAACCAGGATCTGCTTTCCATCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTTGATTATATAGCAATTCAACCAGGATCTGCTTTCCATCCCA  700

seq1  TAAACAAGCACTTCTGATCTTACCTTTTTGGGTTCTGGCATATTATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGCACTTCTGATCTTACCTTTTTGGGTTCTGGCATATTATTAAA  750

seq1  ATAAATAGTGTAGATTCCACTTTTATTAAAACCAGCTTGATATACATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTGTAGATTCCACTTTTATTAAAACCAGCTTGATATACATCTG  800

seq1  CACAGTCTCGAAATGGTTTCTCTTCTTCTCTTTTTCCTCCCTTTAGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTCGAAATGGTTTCTCTTCTTCTCTTTTTCCTCCCTTTAGCAAA  850

seq1  ACTGCAAATTTAAAAGAGAGAAACTTTAATATATAAATAAGAACTTCAGT  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAATTT-AAAGAGAGAAACTTTAATATATAAATAAGAACTTCAGT  899

seq1  ATTATTACCACCCAATGGATTACAAACATAGCAGGTCTTCGTTGTCTTGA  950
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  ATTATTACCACCCAATGGATTACAAACATAGCA-GTCTTCGTTGTC-TGA  947

seq1  CTTAATATCCACACTGTATATATTAAAAACTAAAACATACCCACCTACCA  1000
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTT-ATATCCACACTGTATATATT-AAAACTAAAACATACCCACCTACCA  995

seq1  AATAACTGGTAAGGTTAAAAAATTG-AGAGAAAACCCTGTGG-ATCAATT  1048
      ||||||||||||||||  ||||||| |||||||||||||||| ||||| |
seq2  AATAACTGGTAAGGTT--AAAATTGAAGAGAAAACCCTGTGGAATCAA-T  1042

seq1  TCCAATTACATAGTAATCTTATAT--TAATTTATTTATTTTGGTTTTTCT  1096
      |||||||||||||| |||||||||  ||||||||   ||| |||||||||
seq2  TCCAATTACATAGT-ATCTTATATAATAATTTAT---TTTGGGTTTTTCT  1088

seq1  ATATCCTCAAAACCTCATCCTGTTGGACA  1125
      |||||||||||  ||||||||||||||||
seq2  ATATCCTCAAA--CTCATCCTGTTGGACA  1115


seq1: chr15_42444964_42446169
seq2: B6Ng01-344M11.g_68_1256 (reverse)

seq1  TACAGGTTACCT-TGACCA--CCTTTGCTTCTTTCTCAAGTCTCTTCAGA  47
      ||||||||||||  |||||  | || || || ||  || |||| ||||||
seq2  TACAGGTTACCTGAGACCAACCATTGGCATCCTTGCCAGGTCT-TTCAGA  49

seq1  TTTATATCACATAAATATACTCAGCTATAATGGTACTGAACCTTAT-GCC  96
      ||   ||||||||   ||| ||||| ||||  |||||||||||||| |||
seq2  TT--AATCACATA---ATAATCAGC-ATAAATGTACTGAACCTTATGGCC  93

seq1  ACTTGAGAA-TCCTCTTAGAAAATAAAAACCAAATTGT-GCATGCATAAT  144
      ||||||||| ||||| ||||||||||||    |||||| |||||||||||
seq2  ACTTGAGAATTCCTC-TAGAAAATAAAA---CAATTGTGGCATGCATAAT  139

seq1  AAAGTACAAGTACCATCAATTTTGGAAGACAATGAAAATACAACTTATAA  194
      ||||||| |||| |||||  |||||||||||||| ||||||||| ||| |
seq2  AAAGTAC-AGTA-CATCA--TTTGGAAGACAATG-AAATACAAC-TAT-A  182

seq1  GACTTGGGAAGGTAGCATCTTGGGTAATTTACAAAAGGAAGCAAATACAG  244
      ||||  |||| |||||||| ||||||| ||||||||||||||||||||||
seq2  GACT--GGAAAGTAGCATC-TGGGTAA-TTACAAAAGGAAGCAAATACAG  228

seq1  AATCACTGTCTCGGTGAGAACCAGCCTCTTGCTACACACAGAGCTCTCTA  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATCACTGTCTCGGTGAG-ACCAGCCTCTTGCTACACACAGAGCTCTCTA  277

seq1  CAACAACAGGCCTGGAGGACATATTTCCAACTAGGACATAAAACAGTCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGGCCTGGAGGACATATTTCCAACTAGGACATAAAACAGTCCT  327

seq1  GCACTGGGGGCAACTTGGAAGTCAGGGTAAATGAGCCGCCATCAACACAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGGCAACTTGGAAGTCAGGGTAAATGAGCCGCCATCAACACAC  377

seq1  ATGTCTAAGGTAAATAAATTAAAGACAGAAAAAGCAACTATATTACCAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAGGTAAATAAATTAAAGACAGAAAAAGCAACTATATTACCAGA  427

seq1  AAGTCCTTAAACAGAGGCTGTGGGTGGGGACCAAGATTGTGTAAATTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTAAACAGAGGCTGTGGGTGGGGACCAAGATTGTGTAAATTTCT  477

seq1  GTACTATTTTATGCTTCTAAGAAAGACATCATACTCAAAAGAGTTTATAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATTTTATGCTTCTAAGAAAGACATCATACTCAAAAGAGTTTATAT  527

seq1  GATGTTTTTTTAAGATGAGGTCTCTTCTAACTTGCTCTGTAGTTCTGGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTTTAAGATGAGGTCTCTTCTAACTTGCTCTGTAGTTCTGGCT  577

seq1  GACCTGGAACTCTCAATGTCATTGATGGGATTATATATCTGGCTCAAAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAACTCTCAATGTCATTGATGGGATTATATATCTGGCTCAAAGT  627

seq1  ATCCAAATGAAGATGAAGACAAATGGCAAAAAGTGAAAGTGACCATCAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATGAAGATGAAGACAAATGGCAAAAAGTGAAAGTGACCATCAAG  677

seq1  TCCATTCTAGAACAGGTCTGGTGACATTTCCTTTCCCTTCTTCCTTTCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTAGAACAGGTCTGGTGACATTTCCTTTCCCTTCTTCCTTTCCC  727

seq1  TGCTTGTGTGCTGCTCTTTTCCACCCTGCTTCCTTCCCTGGCTTTCAGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGTGCTGCTCTTTTCCACCCTGCTTCCTTCCCTGGCTTTCAGTT  777

seq1  TGAGGAGGAGGAGTCTTCAAATGTTTCCAGGATTTTTATGTTTTGCATGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAGGAGTCTTCAAATGTTTCCAGGATTTTTATGTTTTGCATGT  827

seq1  GCTTTCTCTTGGCAGGATATTCTACCAAATCCCAATATTTGTCCTTGTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTTGGCAGGATATTCTACCAAATCCCAATATTTGTCCTTGTCC  877

seq1  TTAAAATAAACACAGCACTCAGAGAAGAAAAGAATAAAGGGGTACAACAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAACACAGCACTCAGAGAAGAAAAGAATAAAGGGGTACAACAA  927

seq1  TAACAAATGACAGGAGATTTTCCCTCGATGCCAAGATCCTGAAGCCATCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGACAGGAGATTTTCCCTCGATGCCAAGATCCTGAAGCCATCA  977

seq1  AGGAGCTTAGCAGGAATAATAAAACTCTACTCTTTTCAGTATAGGATCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTAGCAGGAATAATAAAACTCTACTCTTTTCAGTATAGGATCCA  1027

seq1  TGTCACCAAGAGTTCACCAGTGTGCCAAGTGGAGAAGGGTGAAAAACAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAAGAGTTCACCAGTGTGCCAAGTGGAGAAGGGTGAAAAACAGA  1077

seq1  GGCAAGCTTTTCAATGAAAGAAAATAACACTGTATAAGTGAAGATAGTGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTTTTCAATGAAAGAAAATAACACTGTATAAGTGAAGATAGTGA  1127

seq1  TGAAGGTTTTGAAGCAAATAAATAAATAATTTCATCTCCTCTCAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTTTGAAGCAAATAAATAAATAATTTCATCTCCTCTCAGAATTC  1177

seq1  ACACAAGAATTC  1206
      ||||||||||||
seq2  ACACAAGAATTC  1189


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