BAC Information

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BAC

Clone NameB6Ng01-346D09
Chromosome15 (Build37)
Map Location 73,122,799 - 73,289,004
singlet/doubletdoublet
Overlap genePtk2, LOC666053, LOC100040929
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2
Downstream geneDennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346D09.bB6Ng01-346D09.g
ACCGA128170GA128171
length443293
definitionB6Ng01-346D09.b B6Ng01-346D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,288,562 - 73,289,004)(73,122,799 - 73,123,091)
sequence
ggcctagaacttactacatagaccagactggactcagatttacagacgtc
cgtctgttctattctgctcctaagtgctggagtcgaaagcatgcaccagc
acacccagcttactcactggtgggattcaggctgggtttctacttccttt
ggggttttcattgcattttgatttctttagcatgaacaagtatcatttac
attttaaaaattaccacatttattttatctgcatatgcgtgtgggtacat
tcttcaggcacacatatggcagtcagaggacaacttgcaggaaccagttc
tcttctcaccatgttgtcctgggattctaactcagattgtcagtgaatga
aaaaaagaaatacagaaaggaaaggacctgactgcccctaggtagggcag
aggagtttttgttttttttctttttttggtttttctgagacag
atccccagtaccacaagtataaatcaatcaatcagtgaatgaagggaagg
ggggaggaaggaagggatattcagtcagctaattaatcaatttaaaaaca
gacaaataaagaagacagatgtgcctgaactaagctgctttacaaaggtc
acttagagctatttatataatactatgtaatgtgcaatgtaaaggttata
aaagggcttaaatactactagactgtaaataattgttcaaaagttataaa
gaaccatgcaacaaacactaaatttttctatttaaatcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73288562_73289004
seq2: B6Ng01-346D09.b_59_501 (reverse)

seq1  CTGTCTCAGAAAAACCAAAAAAAGAAAAAAAACAAAAACTCCTCTGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAGAAAAACCAAAAAAAGAAAAAAAACAAAAACTCCTCTGCCCT  50

seq1  ACCTAGGGGCAGTCAGGTCCTTTCCTTTCTGTATTTCTTTTTTTCATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGGCAGTCAGGTCCTTTCCTTTCTGTATTTCTTTTTTTCATTCA  100

seq1  CTGACAATCTGAGTTAGAATCCCAGGACAACATGGTGAGAAGAGAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATCTGAGTTAGAATCCCAGGACAACATGGTGAGAAGAGAACTGG  150

seq1  TTCCTGCAAGTTGTCCTCTGACTGCCATATGTGTGCCTGAAGAATGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAAGTTGTCCTCTGACTGCCATATGTGTGCCTGAAGAATGTACC  200

seq1  CACACGCATATGCAGATAAAATAAATGTGGTAATTTTTAAAATGTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCATATGCAGATAAAATAAATGTGGTAATTTTTAAAATGTAAATG  250

seq1  ATACTTGTTCATGCTAAAGAAATCAAAATGCAATGAAAACCCCAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTTCATGCTAAAGAAATCAAAATGCAATGAAAACCCCAAAGGAA  300

seq1  GTAGAAACCCAGCCTGAATCCCACCAGTGAGTAAGCTGGGTGTGCTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACCCAGCCTGAATCCCACCAGTGAGTAAGCTGGGTGTGCTGGTG  350

seq1  CATGCTTTCGACTCCAGCACTTAGGAGCAGAATAGAACAGACGGACGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTCGACTCCAGCACTTAGGAGCAGAATAGAACAGACGGACGTCT  400

seq1  GTAAATCTGAGTCCAGTCTGGTCTATGTAGTAAGTTCTAGGCC  443
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTGAGTCCAGTCTGGTCTATGTAGTAAGTTCTAGGCC  443

seq1: chr15_73122799_73123091
seq2: B6Ng01-346D09.g_74_366

seq1  ATCCCCAGTACCACAAGTATAAATCAATCAATCAGTGAATGAAGGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGTACCACAAGTATAAATCAATCAATCAGTGAATGAAGGGAAGG  50

seq1  GGGGAGGAAGGAAGGGATATTCAGTCAGCTAATTAATCAATTTAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAGGAAGGGATATTCAGTCAGCTAATTAATCAATTTAAAAACA  100

seq1  GACAAATAAAGAAGACAGATGTGCCTGAACTAAGCTGCTTTACAAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATAAAGAAGACAGATGTGCCTGAACTAAGCTGCTTTACAAAGGTC  150

seq1  ACTTAGAGCTATTTATATAATACTATGTAATGTGCAATGTAAAGGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGCTATTTATATAATACTATGTAATGTGCAATGTAAAGGTTATA  200

seq1  AAAGGGCTTAAACACTACTAGACTGTAAATAATTGTTCAAAAGTTATAAA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTTAAATACTACTAGACTGTAAATAATTGTTCAAAAGTTATAAA  250

seq1  GAACCATGCAACAAACACTAAATTTTTCTATTTAAATCATAAA  293
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGCAACAAACACTAAATTTTTCTATTTAAATCATAAA  293