BAC Information

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BAC

Clone NameB6Ng01-347D18
Chromosome15 (Build37)
Map Location 32,414,146 - 32,569,105
singlet/doubletdoublet
Overlap geneSema5a
Upstream geneMarch6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347D18.bB6Ng01-347D18.g
ACCGA128899GA128900
length1,0791,204
definitionB6Ng01-347D18.b B6Ng01-347D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,568,027 - 32,569,105)(32,414,146 - 32,415,350)
sequence
gaattctacaagtaaaatagcaccatcagagtgaggccaaagactccttc
atgtctggtgcctcatcacactggtggctgaagcccaaagacactagaag
ttctctgagctcagtctggagtctgaaccttagtaaggggcagtcacgag
caggaagagcccagggagcaaacattagccagtggtgtctgactgtggca
gtgaaagtgagaaacagtatgggttagataaacaggatagtgctggagag
ctggatggcactgggcatggtggaaatatcctaaagcaactgtgtgactg
tataaaggatgggcagtggagtccagattgccccatctcacttgtaggga
gaggcagtggacaatgtcacggacaaaggaatctcttgatactttagtac
catcctagaaagcaggttagcatctaaaatcatggacaaactggccctgt
gcagtttgcattctttgtcttttcagtatttgccatgggaaaaaaatgtg
gcattgctgtaaagatggcagcacatactccaaaatgtgtgggctctgag
gatcaatgtcactgaacactcttatgtactctactggaggagggaccttc
taaacagaagagagaggcacagagaaagacagagagaaacagaaaagaga
cagagatacaaacacagagatacagaaacacagagagacacacacacaca
gagacagaaacagagacatctctaggtataaacgagagttaagaaaaagg
taaggacagaatttccttgtagcaagtctggagttacaatagtaaatatt
catgtataatttgatgtctggagagttccaggaagaagctgctgtttatt
tttgagaacaggttaagggaagtcaagaaaactcagaattcagaacaatt
catgtttaattaaaatacctgcatgtagctcacagagggagaacaaggga
taaaaggcgtcttgcatttagaagatggctcactaatatcttaatgtgag
gctctttctactgctcttccctagtttcaatttcataatatgggttactc
acagacacacagaccccagacccacagac
gaattcactgactgctcttcacaacagcaaggacaaggagaaaaatagag
atatatattctaactcaccatcggcttccttatgacttctaaacttgaaa
tgttttgatctctctcacctcttggtctttattgtagaaaacattgtcag
aagctaagacaggcgttaggatttttttttcttttttttctttttctgtg
tatctgtgattgggaattgacttttaacttgtgttggtgattaagctatg
cccaggcagggcaatttttcctcctgagatatttgacagcacctagggac
acttttcatggtcatggttgtatatatcctgcactgcacacaacagcacc
tccccacccagaaaagcatctcgttctgcatgatttactgccgatggtgc
aatggtgccagttgatttctccctctgttaccacatatttccaataagtc
agacaatgatccaggaactgaggattagtgcttgatttcatctagaagct
ttgtgctagtctgggaaaattatctttttagagtttcttatgtcctaaac
atatttaaaccattgatgaccatgtctaaagaatctgctctgattcttgg
gtttaaatcgcatccatttattaatatgagattaaatttaaaaatgaatt
aagtcaatttataatatacactctaatgggtcataacactctgatataac
taccctcggctggaaagctctagaatctaaagaatgattaactaattaat
aatttagaataattattccaatgagatagtcacattgattaattttttaa
attatgttttgtatttattgagttgggagagcctggcctcccctgtggct
ctaagaaatcatggctccaatgcaccattgcccatttgtctttctgtatc
acgtgttcttaaaatgttagtttgctggaagcagaaagatttgattagat
ctctttcaagggttcaggagactaagcatgtcgatcatacagtgtaatac
cacataagtatgcctgctcatttgcatgtcatcagcatgcaatcatggcc
tgtcggtggctgctaatcagatgccttggagcagtttcagcacaggatat
cagagccttgaagtattttattggttttaatcctcctagagaagggatta
atccctgaatgatagagtatcagtgagtgtttctgctcgaatagagggtt
gaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32568027_32569105
seq2: B6Ng01-347D18.b_46_1124 (reverse)

seq1  GTCTGT-------GTGTCTGTGTGTCTGTGAGT-ACCCATATTAATTGGA  42
      ||||||       | |||||||||||||||||| ||||||||||    ||
seq2  GTCTGTGGGTCTGGGGTCTGTGTGTCTGTGAGTAACCCATATTA---TGA  47

seq1  AATTGAAACTAGGGAAGAGCAGTAGAAAGAGCCCTCACATTTAAGATATT  92
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AATTGAAACTAGGGAAGAGCAGTAGAAAGAG-CCTCACA-TTAAGATATT  95

seq1  AGTGAGCCATCTTCTAAATGCAAGACGCCCTTTTATCCCTTGTTCTCCCT  142
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTGAGCCATCTTCTAAATGCAAGACG-CCTTTTATCCCTTGTTCTCCCT  144

seq1  CTTGTGAGCTACATGCAGGTATTTTTAATTAAACATGAATTGTTCTGAAT  192
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  C-TGTGAGCTACATGCAGGTA-TTTTAATTAAACATGAATTGTTCTGAAT  192

seq1  TCTGAGTTTTCTTGACTTCCCTTAACCTGTTCTCAAAAATAAACAGCAGC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTTCTTGACTTCCCTTAACCTGTTCTCAAAAATAAACAGCAGC  242

seq1  TTCTTCCTGGAACTCTCCAGACATCAAATTATACATGAATATTTACTATT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGGAACTCTCCAGACATCAAATTATACATGAATATTTACTATT  292

seq1  GTAACTCCAGACTTGCTACAAGGAAATTCTGTCCTTACCTTTTTCTTAAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCAGACTTGCTACAAGGAAATTCTGTCCTTACCTTTTTCTTAAC  342

seq1  TCTCGTTTATACCTAGAGATGTCTCTGTTTCTGTCTCTGTGTGTGTGTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTTATACCTAGAGATGTCTCTGTTTCTGTCTCTGTGTGTGTGTGT  392

seq1  CTCTCTGTGTTTCTGTATCTCTGTGTTTGTATCTCTGTCTCTTTTCTGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTTTCTGTATCTCTGTGTTTGTATCTCTGTCTCTTTTCTGTT  442

seq1  TCTCTCTGTCTTTCTCTGTGCCTCTCTCTTCTGTTTAGAAGGTCCCTCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTTTCTCTGTGCCTCTCTCTTCTGTTTAGAAGGTCCCTCCT  492

seq1  CCAGTAGAGTACATAAGAGTGTTCAGTGACATTGATCCTCAGAGCCCACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGAGTACATAAGAGTGTTCAGTGACATTGATCCTCAGAGCCCACA  542

seq1  CATTTTGGAGTATGTGCTGCCATCTTTACAGCAATGCCACATTTTTTTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGAGTATGTGCTGCCATCTTTACAGCAATGCCACATTTTTTTCC  592

seq1  CATGGCAAATACTGAAAAGACAAAGAATGCAAACTGCACAGGGCCAGTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAAATACTGAAAAGACAAAGAATGCAAACTGCACAGGGCCAGTTT  642

seq1  GTCCATGATTTTAGATGCTAACCTGCTTTCTAGGATGGTACTAAAGTATC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGATTTTAGATGCTAACCTGCTTTCTAGGATGGTACTAAAGTATC  692

seq1  AAGAGATTCCTTTGTCCGTGACATTGTCCACTGCCTCTCCCTACAAGTGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTCCTTTGTCCGTGACATTGTCCACTGCCTCTCCCTACAAGTGA  742

seq1  GATGGGGCAATCTGGACTCCACTGCCCATCCTTTATACAGTCACACAGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCAATCTGGACTCCACTGCCCATCCTTTATACAGTCACACAGTT  792

seq1  GCTTTAGGATATTTCCACCATGCCCAGTGCCATCCAGCTCTCCAGCACTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGATATTTCCACCATGCCCAGTGCCATCCAGCTCTCCAGCACTA  842

seq1  TCCTGTTTATCTAACCCATACTGTTTCTCACTTTCACTGCCACAGTCAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTATCTAACCCATACTGTTTCTCACTTTCACTGCCACAGTCAGA  892

seq1  CACCACTGGCTAATGTTTGCTCCCTGGGCTCTTCCTGCTCGTGACTGCCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGGCTAATGTTTGCTCCCTGGGCTCTTCCTGCTCGTGACTGCCC  942

seq1  CTTACTAAGGTTCAGACTCCAGACTGAGCTCAGAGAACTTCTAGTGTCTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAGGTTCAGACTCCAGACTGAGCTCAGAGAACTTCTAGTGTCTT  992

seq1  TGGGCTTCAGCCACCAGTGTGATGAGGCACCAGACATGAAGGAGTCTTTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCAGCCACCAGTGTGATGAGGCACCAGACATGAAGGAGTCTTTG  1042

seq1  GCCTCACTCTGATGGTGCTATTTTACTTGTAGAATTC  1079
      |||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTCTGATGGTGCTATTTTACTTGTAGAATTC  1079

seq1: chr15_32414146_32415350
seq2: B6Ng01-347D18.g_68_1271

seq1  GAATTCACTGACTGCTCTTCACAACAGCAAGGACAAGGAGAAAAATAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACTGCTCTTCACAACAGCAAGGACAAGGAGAAAAATAGAG  50

seq1  ATATATATTCTAACTCACCATCGGCTTCCTTATGACTTCTAAACTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTCTAACTCACCATCGGCTTCCTTATGACTTCTAAACTTGAAA  100

seq1  TGTTTTGATCTCTCTCACCTCTTGGTCTTTATTGTAGAAAACATTGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGATCTCTCTCACCTCTTGGTCTTTATTGTAGAAAACATTGTCAG  150

seq1  AAGCTAAGACAGGCGTTAGGATTTTTTTTTCTTTTTTTTCTTTTTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGACAGGCGTTAGGATTTTTTTTTCTTTTTTTTCTTTTTCTGTG  200

seq1  TATCTGTGATTGGGAATTGACTTTTAACTTGTGTTGGTGATTAAGCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGATTGGGAATTGACTTTTAACTTGTGTTGGTGATTAAGCTATG  250

seq1  CCCAGGCAGGGCAATTTTTCCTCCTGAGATATTTGACAGCACCTAGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAGGGCAATTTTTCCTCCTGAGATATTTGACAGCACCTAGGGAC  300

seq1  ACTTTTCATGGTCATGGTTGTATATATCCTGCACTGCACACAACAGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATGGTCATGGTTGTATATATCCTGCACTGCACACAACAGCACC  350

seq1  TCCCCACCCAGAAAAGCATCTCGTTCTGCATGATTTACTGCCGATGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCAGAAAAGCATCTCGTTCTGCATGATTTACTGCCGATGGTGC  400

seq1  AATGGTGCCAGTTGATTTCTCCCTCTGTTACCACATATTTCCAATAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGCCAGTTGATTTCTCCCTCTGTTACCACATATTTCCAATAAGTC  450

seq1  AGACAATGATCCAGGAACTGAGGATTAGTGCTTGATTTCATCTAGAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGATCCAGGAACTGAGGATTAGTGCTTGATTTCATCTAGAAGCT  500

seq1  TTGTGCTAGTCTGGGAAAATTATCTTTTTAGAGTTTCTTATGTCCTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTAGTCTGGGAAAATTATCTTTTTAGAGTTTCTTATGTCCTAAAC  550

seq1  ATATTTAAACCATTGATGACCATGTCTAAAGAATCTGCTCTGATTCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAACCATTGATGACCATGTCTAAAGAATCTGCTCTGATTCTTGG  600

seq1  GTTTAAATCGCATCCATTTATTAATATGAGATTAAATTTAAAAATGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATCGCATCCATTTATTAATATGAGATTAAATTTAAAAATGAATT  650

seq1  AAGTCAATTTATAATATACACTCTAATGGGTCATAACACTCTGATATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATTTATAATATACACTCTAATGGGTCATAACACTCTGATATAAC  700

seq1  TACCCTCGGCTGGAAAGCTCTAGAATCTAAAGAATGATTAACTAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCGGCTGGAAAGCTCTAGAATCTAAAGAATGATTAACTAATTAAT  750

seq1  AATTTAGAATAATTATTCCAATGAGATAGTCACATTGATTAATTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAATAATTATTCCAATGAGATAGTCACATTGATTAATTTTTTAA  800

seq1  ATTATGTTTTGTATTTATTGAGTTGGGAGAGCCTGGCCTCCCCTGTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTTGTATTTATTGAGTTGGGAGAGCCTGGCCTCCCCTGTGGCT  850

seq1  CTAAGAAATCATGGCTCCAATGCACCATTGCCCATTTGTCTTTCTGTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAATCATGGCTCCAATGCACCATTGCCCATTTGTCTTTCTGTATC  900

seq1  ACGTGTTCTTAAAATGTTAGTTTGCTGGAAGCAGAAAGATTTGATTAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTCTTAAAATGTTAGTTTGCTGGAAGCAGAAAGATTTGATTAGAT  950

seq1  C-CCTTCAAGGG-TCAGAGAACTAAGGCATGTCGATCATACAGTTGTAAT  998
      | | |||||||| ||||   ||||| ||||||||||||||||| ||||||
seq2  CTCTTTCAAGGGTTCAGGAGACTAA-GCATGTCGATCATACAG-TGTAAT  998

seq1  A-CACATAAGTATGCCTGCTCATTTGCATGTCATCAGCATGCAATCATGG  1047
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATAAGTATGCCTGCTCATTTGCATGTCATCAGCATGCAATCATGG  1048

seq1  -CTGTCGGTGGCTGCTAATCAGATGCCTT-GAGCAGTTCCAGCACAGATA  1095
       |||||||||||||||||||||||||||| |||||||| ||||||||   
seq2  CCTGTCGGTGGCTGCTAATCAGATGCCTTGGAGCAGTTTCAGCACAGGAT  1098

seq1  ATCAGAGCC-TGAAGTATTT--ATGTTTTAAATCTTCTAAGAAAATGTGT  1142
      ||||||||| ||||||||||   || ||| |||| ||  ||| || | | 
seq2  ATCAGAGCCTTGAAGTATTTTATTGGTTTTAATCCTCCTAGAGAA-GGGA  1147

seq1  TTTATTCTCCTGAGTGATAGGAAGTATTCAGTGAGTGTTTCCTGGCAGAA  1192
      || ||   ||||| ||||||  |||| ||||||||||||| |||   |||
seq2  TTAAT--CCCTGAATGATAG--AGTA-TCAGTGAGTGTTT-CTGCTCGAA  1191

seq1  TGAAGGGTTGAAT  1205
      |  ||||||||||
seq2  TAGAGGGTTGAAT  1204