BAC Information

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BAC

Clone NameB6Ng01-350C11
Chromosome15 (Build37)
Map Location 52,049,668 - 52,177,065
singlet/doubletdoublet
Overlap geneLOC665219, Slc30a8
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
Downstream geneLOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350C11.bB6Ng01-350C11.g
ACCGA130914GA130915
length1,1341,139
definitionB6Ng01-350C11.b B6Ng01-350C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,175,922 - 52,177,065)(52,049,668 - 52,050,800)
sequence
gaattctatgacatcccaactccatccctcgaaaagaggccttatctttc
aaggccactaatttgtcaaaagtatttgtcaaaaatactactctaaagaa
atcccaaaatggagtattcagttttctgttgagagattttaccctgccac
agcaaaagtatatatagaaaggggcaataaaaggctgttgttctgcagtt
ttctaaactatgtacttaatgacttaaaacatgagctagtgcacagaaaa
acatggaactgatttgcaaagcccctttctgaaaatgaggttaaccttaa
aaaatggaacaaattcacatgtcatcctccttccattgtacaggctaact
tgtggtttagagcattttctacataacagatattctttatcatagtattc
ccaaacacacccaagcattgcaaatccaggaagataatatttgatagcat
tattggaatgtatgcagtagccatatagttttgatggctacaaatatgag
aattatattgttagcaatcatctgcttttgaagaaaggaaatagaggaca
tttttattgataggttctctccagggcttgaccattactcctgagagcct
actcatctctctgctcatatcacatagatgaaagacatctttcatctctt
cccagcttttacatttgaagatcttttgtcaagtattaccacattacctc
tgaccctcatcatcctctccagctggattcttatacctatgacaaggtga
tttaaaaaaatgctctcaattcttaaatcaacatccatttcccctgaccc
agtctgttaaccaaatagattctttctaccaagaaaagatagagaactaa
aaagaaattttcctggcagacttcctttctataatggaaaatattccacc
atgattttggttattgaaaaagttaaggcaatttaacctgaactgtcttc
tccctgattttattctaaacaacatatattaacattttaaatagaactga
aacaggtgccagtaacagaatgacaagcgttagtgtgaaatctgaaagtt
aagaaacttatcacatatgtcacatttttttctttgaaactcttctgcac
ttgtctgcttagtggctcattcactgtcaggtca

gaattctttgcttagctttgcttatcctcctgggaggaatatttgtgcta
actgaaggaagtaagcagtgggctattagtctatgccagtccatcctaat
ccatcttcaccagaggctgatggaattaatctgttaacactaggactttc
aaaaaaatcgtacgggatcatagaactgagaagattgctcactgggtaag
agttctttctgtgcaagcataagaagctgggctttaattcttagtaacat
aaggcacaggcaggacacacatttctaactcagaggaataaatcagagaa
tgatagagctagacatctgatgctttattatggccttggcacatgtctca
tagttacgcgtgcgcgcgaggacacacacacacacacacacacacacaca
cacacaacgatcctgcttacttgttttttttagacaacattctgacttcc
caccattagtcatgaaggacacactttcagccatggtgtcgttttttaca
tttaaaggaaagtaggtgatggcaaagacatttataattcctcttagatt
acgacttggccatcaatcaagtggttttatattactaatataattaagga
acagtagaaactaaaatgtagagagtaatttttttattttattttttatt
tttttattttttacaatccatatttggttccctccttcccgatccaccgt
ccgactgttccacatcccataccttctctccaccccctgtctccacttgg
atgtctccacctcctaccccacctgacctctaaatttcctggggcttcca
gtatcttgagggttaggtgcatcatctctgaatgaacatagacctggaag
tcctctgctgtatgtgtgttgggggcctcatatcagctggtgtatactgc
ctgcttggtggtctagtgtttgagacatctcaggatccagattaaattga
agactgctggtcctcctacaggatcaactcttctcagtttcttttcagcc
tttccaaattcaaacaataggggtcagctgcttctgtccatgatggggtg
caatattctgcatctgacttttcagcctgctgttgatctttccagagggc
cagtcatgaatagattccatttttgtggagagcttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_52175922_52177065
seq2: B6Ng01-350C11.b_50_1183 (reverse)

seq1  TGACTTGACAGTG-ATGAGGCCACTTAGCAGACCAGTGCAGGAGGAGGTT  49
      |||| |||||||| |||| |||||| ||||||| ||||||| ||   |||
seq2  TGACCTGACAGTGAATGA-GCCACTAAGCAGACAAGTGCAGAAG--AGTT  47

seq1  TCAAAGAAAAAAATGGTGACCATATGTGGATTAGTTTCTTTAACTTTCAG  99
      |||||||||||||| |||| ||||||| ||| |||||| |||||||||||
seq2  TCAAAGAAAAAAAT-GTGA-CATATGT-GATAAGTTTC-TTAACTTTCAG  93

seq1  ATTTCACACTTAACGCTTGTCATTCTGTTACTGGGCACCTGTTTCAGTTC  149
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  ATTTCACAC-TAACGCTTGTCATTCTGTTACT-GGCACCTGTTTCAGTTC  141

seq1  TATTTTAAAATGTTAATATATGTTGTTTAGAATAAAATCAGGGAGAAGAC  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTAAAATGTTAATATATGTTGTTTAGAATAAAATCAGGGAGAAGAC  190

seq1  AGTTCAGGTTAATTTGCCTTAACTTTTTTCAATAACCAAAATCATGGTGG  249
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  AGTTCAGGTTAAATTGCCTTAAC-TTTTTCAATAACCAAAATCATGGTGG  239

seq1  AATATTTTCCATTATAGAAAGGAAGTCTGCCAGGAAAATTTCTTTTTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCCATTATAGAAAGGAAGTCTGCCAGGAAAATTTCTTTTTAGT  289

seq1  TCTCTATCTTTTCTTGGTAGAAAGAATCTATTTGGTTAACAGACTGGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTTTTCTTGGTAGAAAGAATCTATTTGGTTAACAGACTGGGTC  339

seq1  AGGGGAAATGGATGTTGATTTAAGAATTGAGAGCATTTTTTTAAATCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAATGGATGTTGATTTAAGAATTGAGAGCATTTTTTTAAATCACC  389

seq1  TTGTCATAGGTATAAGAATCCAGCTGGAGAGGATGATGAGGGTCAGAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAGGTATAAGAATCCAGCTGGAGAGGATGATGAGGGTCAGAGGT  439

seq1  AATGTGGTAATACTTGACAAAAGATCTTCAAATGTAAAAGCTGGGAAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTAATACTTGACAAAAGATCTTCAAATGTAAAAGCTGGGAAGAG  489

seq1  ATGAAAGATGTCTTTCATCTATGTGATATGAGCAGAGAGATGAGTAGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGATGTCTTTCATCTATGTGATATGAGCAGAGAGATGAGTAGGCT  539

seq1  CTCAGGAGTAATGGTCAAGCCCTGGAGAGAACCTATCAATAAAAATGTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGTAATGGTCAAGCCCTGGAGAGAACCTATCAATAAAAATGTCC  589

seq1  TCTATTTCCTTTCTTCAAAAGCAGATGATTGCTAACAATATAATTCTCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCCTTTCTTCAAAAGCAGATGATTGCTAACAATATAATTCTCAT  639

seq1  ATTTGTAGCCATCAAAACTATATGGCTACTGCATACATTCCAATAATGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGCCATCAAAACTATATGGCTACTGCATACATTCCAATAATGCT  689

seq1  ATCAAATATTATCTTCCTGGATTTGCAATGCTTGGGTGTGTTTGGGAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATATTATCTTCCTGGATTTGCAATGCTTGGGTGTGTTTGGGAATA  739

seq1  CTATGATAAAGAATATCTGTTATGTAGAAAATGCTCTAAACCACAAGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATAAAGAATATCTGTTATGTAGAAAATGCTCTAAACCACAAGTTA  789

seq1  GCCTGTACAATGGAAGGAGGATGACATGTGAATTTGTTCCATTTTTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTACAATGGAAGGAGGATGACATGTGAATTTGTTCCATTTTTTAAG  839

seq1  GTTAACCTCATTTTCAGAAAGGGGCTTTGCAAATCAGTTCCATGTTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCTCATTTTCAGAAAGGGGCTTTGCAAATCAGTTCCATGTTTTTC  889

seq1  TGTGCACTAGCTCATGTTTTAAGTCATTAAGTACATAGTTTAGAAAACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTAGCTCATGTTTTAAGTCATTAAGTACATAGTTTAGAAAACTG  939

seq1  CAGAACAACAGCCTTTTATTGCCCCTTTCTATATATACTTTTGCTGTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAACAGCCTTTTATTGCCCCTTTCTATATATACTTTTGCTGTGGC  989

seq1  AGGGTAAAATCTCTCAACAGAAAACTGAATACTCCATTTTGGGATTTCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAAATCTCTCAACAGAAAACTGAATACTCCATTTTGGGATTTCTT  1039

seq1  TAGAGTAGTATTTTTGACAAATACTTTTGACAAATTAGTGGCCTTGAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGTATTTTTGACAAATACTTTTGACAAATTAGTGGCCTTGAAAG  1089

seq1  ATAAGGCCTCTTTTCGAGGGATGGAGTTGGGATGTCATAGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCTCTTTTCGAGGGATGGAGTTGGGATGTCATAGAATTC  1134


seq1: chr15_52049668_52050800
seq2: B6Ng01-350C11.g_70_1208

seq1  GAATTCTTTGCTTAGCTTTGCTTATCCTCCTGGGAGGAATATTTGTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTAGCTTTGCTTATCCTCCTGGGAGGAATATTTGTGCTA  50

seq1  ACTGAAGGAAGTAAGCAGTGGGCTATTAGTCTATGCCAGTCCATCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGAAGTAAGCAGTGGGCTATTAGTCTATGCCAGTCCATCCTAAT  100

seq1  CCATCTTCACCAGAGGCTGATGGAATTAATCTGTTAACACTAGGACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCACCAGAGGCTGATGGAATTAATCTGTTAACACTAGGACTTTC  150

seq1  AAAAAAATCGTACGGGATCATAGAACTGAGAAGATTGCTCACTGGGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCGTACGGGATCATAGAACTGAGAAGATTGCTCACTGGGTAAG  200

seq1  AGTTCTTTCTGTGCAAGCATAAGAAGCTGGGCTTTAATTCTTAGTAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCTGTGCAAGCATAAGAAGCTGGGCTTTAATTCTTAGTAACAT  250

seq1  AAGGCACAGGCAGGACACACATTTCTAACTCAGAGGAATAAATCAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGGCAGGACACACATTTCTAACTCAGAGGAATAAATCAGAGAA  300

seq1  TGATAGAGCTAGACATCTGATGCTTTATTATGGCCTTGGCACATGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGCTAGACATCTGATGCTTTATTATGGCCTTGGCACATGTCTCA  350

seq1  TAGTTACGCGTGCGCGCGAGGACACACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACGCGTGCGCGCGAGGACACACACACACACACACACACACACACA  400

seq1  CACACAACGATCCTGCTTACTTGTTTTTTTTAGACAACATTCTGACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACGATCCTGCTTACTTGTTTTTTTTAGACAACATTCTGACTTCC  450

seq1  CACCATTAGTCATGAAGGACACACTTTCAGCCATGGTGTCGTTTTTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTAGTCATGAAGGACACACTTTCAGCCATGGTGTCGTTTTTTACA  500

seq1  TTTAAAGGAAAGTAGGTGATGGCAAAGACATTTATAATTCCTCTTAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGAAAGTAGGTGATGGCAAAGACATTTATAATTCCTCTTAGATT  550

seq1  ACGACTTGGCCATCAATCAAGTGGTTTTATATTACTAATATAATTAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTTGGCCATCAATCAAGTGGTTTTATATTACTAATATAATTAAGGA  600

seq1  ACAGTAGAAACTAAAATGTAGAGAGTAATTTTTTTATTTTATTTTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGAAACTAAAATGTAGAGAGTAATTTTTTTATTTTATTTTTTATT  650

seq1  TTTTTATTTTTTACAATCCATATTTGGTTCCCTCCTTCCCGATCCACCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTTACAATCCATATTTGGTTCCCTCCTTCCCGATCCACCGT  700

seq1  CCGACTGTTCCACATCCCATACCTTCTCTCCACCCCCTGTCTCCACTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGTTCCACATCCCATACCTTCTCTCCACCCCCTGTCTCCACTTGG  750

seq1  ATGTCTCCACCTCCTACCCCACCTGACCTCTAAATTTCCTGGGGCTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCACCTCCTACCCCACCTGACCTCTAAATTTCCTGGGGCTTCCA  800

seq1  GTATCTTGAGGGTTAGGTGCATCATCTCTGAATGAACATAGACCTGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGAGGGTTAGGTGCATCATCTCTGAATGAACATAGACCTGGAAG  850

seq1  TCCTCTGCTGTATGTGTGTTGGGGGCCTCATATCAGCTGGTGTATACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTGTATGTGTGTTGGGGGCCTCATATCAGCTGGTGTATACTGC  900

seq1  CTGCTTGGTGGTCTAGTGTTTGAGACATCTCAGGGATCCAGATT-AATTG  949
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  CTGCTTGGTGGTCTAGTGTTTGAGACATCTCA-GGATCCAGATTAAATTG  949

seq1  -AGACTGCTGGTCCTCCTACAGGATC-ACTCTTCTCAGTTTC-TTTCAGC  996
       ||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  AAGACTGCTGGTCCTCCTACAGGATCAACTCTTCTCAGTTTCTTTTCAGC  999

seq1  CTTCCCAAATTC-AACAATAGGGGTCAGCTGCTTCTGTCCATTGGTTGGG  1045
      ||| |||||||| |||||||||||||||||||||||||||| || | |||
seq2  CTTTCCAAATTCAAACAATAGGGGTCAGCTGCTTCTGTCCA-TGATGGGG  1048

seq1  TGCAAATATCTGCATCTGACTTTTTCAG-CTGCTTGTTGGATCTTT-CAG  1093
      |||||   |||||||||||| ||||||| |||| |||| ||||||| |||
seq2  TGCAATATTCTGCATCTGAC-TTTTCAGCCTGC-TGTT-GATCTTTCCAG  1095

seq1  AGGG-CAGTCATG-ATAGA-TCCCTTTTTGT-GAGAGCTCCATA  1133
      |||| |||||||| ||||| ||| ||||||| ||||||| ||||
seq2  AGGGCCAGTCATGAATAGATTCCATTTTTGTGGAGAGCTTCATA  1139


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