BAC Information

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BAC

Clone NameB6Ng01-350I12
Chromosome15 (Build37)
Map Location 95,053,661 - 95,054,802
singlet/doubletsinglet
Overlap geneNell2
Upstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350I12.bB6Ng01-350I12.g
ACCGA131174GA131175
length1,2081,143
definitionB6Ng01-350I12.b B6Ng01-350I12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctggtctg
atagaaagatggaatggccttttgaagacgcagttacagtgccaattagg
tggtaacagcttggaaggttggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaaaggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcctagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaaactcagacttccccc
tggtcattttgggcttctaatgcccctaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttgcctctccacaatggaggaaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctattagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgaccaaggatgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtactatgaatgctcactgtaaatttactaatgcgtttgcgat
tgtacgagggatagttatatcatgttaggggtattcacaaccttgttatt
gtttcatgtgaacatgagatattatttgtgtcaagttgacaaggggtgga
ttgtagtggctattccctggtgtcaacttgacaatattgaaatgactaaa
atcccggaattggaggctccaccagtgacccttatctgagcttgagatcc
ttatctggatcttggttgagatcttgagccatagtgctatgaatcagaag
atgaatctctccgagttaaggaacccaccttatctggcctacacttctgc
tgaaccaattacgacattgaagacgggagtctaagtctctggtcctctga
gtctctct
gaattcactattggattgaacaggttagagatggcatgaaccagtaactg
tgaagagagcacagtagaaatgatccatctataaaacagaaagactgcat
ccaaacagagctttacctcagagccgtggagcaatctgagtggaatgtaa
cgggaatcctcgaagactaggaaggaggaacaggaatctcaaaatctcag
ctcgagcgtgtgggtgcacacacacacacacaaacacacacatacacaca
cacatgcacacatacacacacatacacacatacacacacatacacacaca
cacatacacacacacatccctaaaaatatcataagcaaactgctataaac
caaagatagagtgttatggaggagacaagaggcaggagacagacacatta
actacaaaagaacaaaagttcaaatgatggctcaatcagaaatgatagaa
acacaaaaacaatgaacacaccttgcaaagggctgcaacaatctgtcaga
ttgaactttatgtccactaacacatctttcagaaatattttcagataaat
gcaacttgagacagtttcttcctataggcctacagtacagactttcctct
acagacaacatacaagagacaaaaggggttctttaggctatggcagagtg
actgaatggaagcaggtgtcgactgccccatgtaagaagagataaggagc
aacagagatggtgagtatctgaacaaatataaaatattgtttattcctct
actttttaaaaaatacgggtgattagataaaaacaggagcatggaattat
gagtagagtgttaacaggcatactgtatatggtcagtgtgtacagatagg
cttatgataagttctatgcttgcaacactcatactttaatgactagtgtg
atgctaagtcatgcaacacactgacacacattaaagccttcagaaaaaac
agacactagtaattgtagcttaagataaaagagtaatgttctttattgca
ttcattggtcggtgtgaagagggcacactgtaccatgtgttacaacaata
ctggccaggaggacatcctgtgatacggctctgtttttcactgtgggtcc
agaatacattcagacttggtgcaagtgctctatatattaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_95053661_95054802
seq2: B6Ng01-350I12.g_66_1208

seq1  GAATTCACTATTGGATTGAACAGGTTAGAGATGGCATGAACCAGTAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTGGATTGAACAGGTTAGAGATGGCATGAACCAGTAACTG  50

seq1  TGAAGAGAGCACAGTAGAAATGATCCATCTATAAAACAGAAAGACTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAGCACAGTAGAAATGATCCATCTATAAAACAGAAAGACTGCAT  100

seq1  CCAAACAGAGCTTTACCTCAGAGCCGTGGAGCAATCTGAGTGGAATGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGAGCTTTACCTCAGAGCCGTGGAGCAATCTGAGTGGAATGTAA  150

seq1  CGGGAATCCTCGAAGACTAGGAAGGAGGAACAGGAATCTCAAAATCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAATCCTCGAAGACTAGGAAGGAGGAACAGGAATCTCAAAATCTCAG  200

seq1  CTCGAGCGTGTGGGTGCACACACACACACACAAACACACACATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGCGTGTGGGTGCACACACACACACACAAACACACACATACACACA  250

seq1  CACATGCACACATACACACACATACACACATACACACACATACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACACATACACACACATACACACATACACACACATACACACACA  300

seq1  CACATACACACACACATCCCTAAAAATATCATAAGCAAACTGCTATAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACATCCCTAAAAATATCATAAGCAAACTGCTATAAAC  350

seq1  CAAAGATAGAGTGTTATGGAGGAGACAAGAGGCAGGAGACAGACACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAGAGTGTTATGGAGGAGACAAGAGGCAGGAGACAGACACATTA  400

seq1  ACTACAAAAGAACAAAAGTTCAAATGATGGCTCAATCAGAAATGATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAAGAACAAAAGTTCAAATGATGGCTCAATCAGAAATGATAGAA  450

seq1  ACACAAAAACAATGAACACACCTTGCAAAGGGCTGCAACAATCTGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAACAATGAACACACCTTGCAAAGGGCTGCAACAATCTGTCAGA  500

seq1  TTGAACTTTATGTCCACTAACACATCTTTCAGAAATATTTTCAGATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTATGTCCACTAACACATCTTTCAGAAATATTTTCAGATAAAT  550

seq1  GCAACTTGAGACAGTTTCTTCCTATAGGCCTACAGTACAGACTTTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTGAGACAGTTTCTTCCTATAGGCCTACAGTACAGACTTTCCTCT  600

seq1  ACAGACAACATACAAGAGACAAAAGGGGTTCTTTAGGCTATGGCAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAACATACAAGAGACAAAAGGGGTTCTTTAGGCTATGGCAGAGTG  650

seq1  ACTGAATGGAAGCAGGTGTCGACTGCCCCATGTAAGAAGAGATAAGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGGAAGCAGGTGTCGACTGCCCCATGTAAGAAGAGATAAGGAGC  700

seq1  AACAGAGATGGTGAGTATCTGAACAAATATAAAATATTGTTTATTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGATGGTGAGTATCTGAACAAATATAAAATATTGTTTATTCCTCT  750

seq1  ACTTTTTAAAAAATACGGGTGATTAGATAAAAACAGGAGCATGGAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAAAAATACGGGTGATTAGATAAAAACAGGAGCATGGAATTAT  800

seq1  GAGTAGAGTGTTAACAGGCATACTGTATATGGTCAGTGTGTACAGATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGTGTTAACAGGCATACTGTATATGGTCAGTGTGTACAGATAGG  850

seq1  CTTATGATAAGTTCTATGCTTGCAACACTCATACTTTAATGACTAGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATAAGTTCTATGCTTGCAACACTCATACTTTAATGACTAGTGTG  900

seq1  ATGCTAAGTCATGCAACACACTGACACACATTAAAGCCTTCAG-AAAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGCTAAGTCATGCAACACACTGACACACATTAAAGCCTTCAGAAAAAAC  950

seq1  AGACACTAGTAATTGTAGCTTAAGATAAAAGAGTAATGTTC-TTATTGCA  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACACTAGTAATTGTAGCTTAAGATAAAAGAGTAATGTTCTTTATTGCA  1000

seq1  TTCATTGGTCGGTGTG-AGAGGGCACACTTGTACCATGGTGTACA--CAT  1045
      |||||||||||||||| ||||||||||| |||||||||   ||||   ||
seq2  TTCATTGGTCGGTGTGAAGAGGGCACAC-TGTACCATGTGTTACAACAAT  1049

seq1  ACTGGCCA-GAGGACATCTTGTGATAACGGGCTCTG-TTTTCACTGTGGG  1093
      |||||||| ||||||||| |||||||   ||||||| |||||||||||||
seq2  ACTGGCCAGGAGGACATCCTGTGATA--CGGCTCTGTTTTTCACTGTGGG  1097

seq1  TCCCAGGAATACA-TCAGACTTGGTGGCAAGTGCCTCTATATATTAAGAC  1142
      |||   ||||||| ||||||||||| ||||||| ||||||||||||||||
seq2  TCC--AGAATACATTCAGACTTGGT-GCAAGTG-CTCTATATATTAAGAC  1143