BAC Information

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BAC

Clone NameB6Ng01-350J19
Chromosome15 (Build37)
Map Location 80,529,572 - 80,672,792
singlet/doubletdoublet
Overlap geneAW544981, Tnrc6b
Upstream geneGtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350J19.bB6Ng01-350J19.g
ACCGA131230GA131231
length1,176813
definitionB6Ng01-350J19.b B6Ng01-350J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,671,618 - 80,672,792)(80,529,572 - 80,530,378)
sequence
gaattcaggcaaattattcaacttttaagtcagttttgtatctatggagt
gtgtataaagtactgactgtgaagatagctggtgctgacgagctaacact
gccacaggctctcccatatcacacactgacctgcatcagtcattagagaa
gcagccagtgcatgaaacgctgtccctaagaaagcaggtctctataaaat
gagatctcccaccaaagaactaactctgaatgggtgagcaggaaagggaa
aggacggaggagctcctgggaaccacgctggagacagcacatgactctaa
gaacagaatttggggataagcttctatgatacaaactcagaagccacaac
aaatgacaacatatctgaccatagaaaaccttttacacaattactgtgtt
ctctgtgaacaaaatcagaactgtgagaaaacaatgtcactatcttatat
tgccaagagctagagttcacattacatgcgctcctacaaaccaacgggag
ataacctcgtggggaaatggatgaaggaagcgcccacctgaaaaggaaac
atttggggataaaggtactgtcaacagtgaaaccatccacagacaacact
attggtgagaatgtaggctgttaaatctctatgcaaaacaatccagccat
tatttatcaaaatcacagtccagtctttgactcagctatcttattttttt
ggtatttatcatggaaaaataattacccacgattacacatgtggagaact
gtgtatgtaaagaatacccattgcaacaatgtgtgtaatgtcaaagataa
ataattatatcttatctacttagggatactatgtaatcgtataaagaagc
tcttactatgctaataaagctaaatcttcaagacttagttgaatttaaaa
tgcaagatgcaaaatataattcatgctatagtatatataagtagaagggc
attttataattcttttattataggggtatacattccctttgggaaggaat
tactactgctgcctataccagagaagtaccctttaggcatgccacagttg
cacagtgtgaagttcaaagccagcttccagagtagggtttctctgccatc
ttgtggatccgagcgtcaggctgcatcaaagtcttccacgattgaccaca
tgccaatgcagtgtgtacaatatttt
gaattccaaacagcagagtctgaatctcttctcagcatctaaaccgtcgc
atggctgcagcagaccgcggtggcctgacaagaaacaccgctaccttgtt
tacatgaagtagacgcctgcctagtgtctgctttccttgttgccaacctg
tcctccactgggccagccctccttacaggtcctcgggtgggacaagggcc
attctttctgccttggtaggacagaatgtccaaagcagccccagccactt
tgccttcttcttggacatctggtgctgtctagttctccatatcccagagg
ttggtgggaaaaatggaagaaggtgggactctgagccagtcttgctccag
gtggactatgcagctggaatggctggaatattgtctattatggtcttcag
acgctcatttctgatggctcctgaactagtctgctactggaattgtggtg
gggataggaatacttctgcctccctccagcctgtggcaggatctgacagt
gctggcaaagaacccctttcctttctacactgtagcctgcctgagtgccc
tgggattccctggatggtgctgttgaaagctagagcttgtagagtgcctt
tctcgggcctgctcctttcagtaggcttttgtttacagaccctgtggagg
gtgggaggaggatgggccctcaggacatgaacattttgtggttcctcccc
agccccacctcccattacccactagggctttcttcattgaaattcatgcc
aaagactagccatagtcttcttttcagaattgcaagctgtttttagaagc
ctccggttctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80671618_80672792
seq2: B6Ng01-350J19.b_47_1222 (reverse)

seq1  AAAAT-TTGTACACACTGGCATTTGGCAATGTGGCTCATCTGTTAGAAGG  49
      ||||| ||||||||||| ||| ||||| |||||| |||   ||  | | |
seq2  AAAATATTGTACACACT-GCA-TTGGC-ATGTGG-TCAATCGT--GGAAG  44

seq1  ACTTTGATGCAGGCCTGACGCT-GGATCCCACAAGATGGCAGGAGAAACC  98
      ||||||||||| |||||||||| |||| ||||||||||||| ||||||||
seq2  ACTTTGATGCA-GCCTGACGCTCGGAT-CCACAAGATGGCA-GAGAAACC  91

seq1  CTACTCTGGGAAGCTGGCCTTTGACTTCCACACTGTGC-ACTGTGGCATG  147
      ||||||| ||||||||| ||||||  | |||||||||| |||||||||||
seq2  CTACTCT-GGAAGCTGG-CTTTGAACTTCACACTGTGCAACTGTGGCATG  139

seq1  CCTAA--GGTACCTTCTCTGGTATA-GCAGCAGTAGTAATTCCTT-CCAA  193
      |||||  |||| ||||||||||||| ||||||||||||||||||| ||||
seq2  CCTAAAGGGTA-CTTCTCTGGTATAGGCAGCAGTAGTAATTCCTTCCCAA  188

seq1  AGG--ATGTATACCCCTAT-ATAAA--GATTAT-AAATGCCCTTCTACTT  237
      |||  |||||||||||||| |||||   ||||| ||||||||||||||||
seq2  AGGGAATGTATACCCCTATAATAAAAGAATTATAAAATGCCCTTCTACTT  238

seq1  ATATATACTATAGCATGAATTATATTTTGCATCTTGCATTTTAAATTCAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTATAGCATGAATTATATTTTGCATCTTGCATTTTAAATTCAA  288

seq1  CTAAGTCTTGAAGATTTAGCTTTATTAGCATAGTAAGAGCTTCTTTATAC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCTTGAAGATTTAGCTTTATTAGCATAGTAAGAGCTTCTTTATAC  338

seq1  GATTACATAGTATCCCTAAGTAGATAAGATATAATTATTTATCTTTGACA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATAGTATCCCTAAGTAGATAAGATATAATTATTTATCTTTGACA  388

seq1  TTACACACATTGTTGCAATGGGTATTCTTTACATACACAGTTCTCCACAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACATTGTTGCAATGGGTATTCTTTACATACACAGTTCTCCACAT  438

seq1  GTGTAATCGTGGGTAATTATTTTTCCATGATAAATACCAAAAAAATAAGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATCGTGGGTAATTATTTTTCCATGATAAATACCAAAAAAATAAGA  488

seq1  TAGCTGAGTCAAAGACTGGACTGTGATTTTGATAAATAATGGCTGGATTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGTCAAAGACTGGACTGTGATTTTGATAAATAATGGCTGGATTG  538

seq1  TTTTGCATAGAGATTTAACAGCCTACATTCTCACCAATAGTGTTGTCTGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATAGAGATTTAACAGCCTACATTCTCACCAATAGTGTTGTCTGT  588

seq1  GGATGGTTTCACTGTTGACAGTACCTTTATCCCCAAATGTTTCCTTTTCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTTCACTGTTGACAGTACCTTTATCCCCAAATGTTTCCTTTTCA  638

seq1  GGTGGGCGCTTCCTTCATCCATTTCCCCACGAGGTTATCTCCCGTTGGTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCGCTTCCTTCATCCATTTCCCCACGAGGTTATCTCCCGTTGGTT  688

seq1  TGTAGGAGCGCATGTAATGTGAACTCTAGCTCTTGGCAATATAAGATAGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGCGCATGTAATGTGAACTCTAGCTCTTGGCAATATAAGATAGT  738

seq1  GACATTGTTTTCTCACAGTTCTGATTTTGTTCACAGAGAACACAGTAATT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTTTCTCACAGTTCTGATTTTGTTCACAGAGAACACAGTAATT  788

seq1  GTGTAAAAGGTTTTCTATGGTCAGATATGTTGTCATTTGTTGTGGCTTCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAAGGTTTTCTATGGTCAGATATGTTGTCATTTGTTGTGGCTTCT  838

seq1  GAGTTTGTATCATAGAAGCTTATCCCCAAATTCTGTTCTTAGAGTCATGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTATCATAGAAGCTTATCCCCAAATTCTGTTCTTAGAGTCATGT  888

seq1  GCTGTCTCCAGCGTGGTTCCCAGGAGCTCCTCCGTCCTTTCCCTTTCCTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCAGCGTGGTTCCCAGGAGCTCCTCCGTCCTTTCCCTTTCCTG  938

seq1  CTCACCCATTCAGAGTTAGTTCTTTGGTGGGAGATCTCATTTTATAGAGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCATTCAGAGTTAGTTCTTTGGTGGGAGATCTCATTTTATAGAGA  988

seq1  CCTGCTTTCTTAGGGACAGCGTTTCATGCACTGGCTGCTTCTCTAATGAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCTTAGGGACAGCGTTTCATGCACTGGCTGCTTCTCTAATGAC  1038

seq1  TGATGCAGGTCAGTGTGTGATATGGGAGAGCCTGTGGCAGTGTTAGCTCG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGGTCAGTGTGTGATATGGGAGAGCCTGTGGCAGTGTTAGCTCG  1088

seq1  TCAGCACCAGCTATCTTCACAGTCAGTACTTTATACACACTCCATAGATA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCAGCTATCTTCACAGTCAGTACTTTATACACACTCCATAGATA  1138

seq1  CAAAACTGACTTAAAAGTTGAATAATTTGCCTGAATTC  1175
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGACTTAAAAGTTGAATAATTTGCCTGAATTC  1176

seq1: chr15_80529572_80530378
seq2: B6Ng01-350J19.g_69_881

seq1  GAATTCCAAACAGCAGAGTCTGAATCTCTTCTCAGCATCTAAACCGTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAGCAGAGTCTGAATCTCTTCTCAGCATCTAAACCGTCGC  50

seq1  ATGGCTGCAGCAGACCGCGGTGGCCTGACAAGAAACACCGCTACCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCAGCAGACCGCGGTGGCCTGACAAGAAACACCGCTACCTTGTT  100

seq1  TACATGAAGTAGACGCCTGCCTAGTGTCTGCTTTCCTTGTTGCCAACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGTAGACGCCTGCCTAGTGTCTGCTTTCCTTGTTGCCAACCTG  150

seq1  TCCTCCACTGGGCCAGCCCTCCTTACAGGTCCTCGGGTGGGACAAGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACTGGGCCAGCCCTCCTTACAGGTCCTCGGGTGGGACAAGGGCC  200

seq1  ATTCTTTCTGCCTTGGTAGGACAGAATGTCCAAAGCAGCCCCAGCCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTGCCTTGGTAGGACAGAATGTCCAAAGCAGCCCCAGCCACTT  250

seq1  TGCCTTCTTCTTGGACATCTGGTGCTGTCTAGTTCTCCATATCCCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTCTTGGACATCTGGTGCTGTCTAGTTCTCCATATCCCAGAGG  300

seq1  TTGGTGGGAAAAATGGAAGAAGGTGGGACTCTGAGCCAGTCTTGCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGAAAAATGGAAGAAGGTGGGACTCTGAGCCAGTCTTGCTCCAG  350

seq1  GTGGACTATGCAGCTGGAATGGCTGGAATATTGTCTATTATGGTCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTATGCAGCTGGAATGGCTGGAATATTGTCTATTATGGTCTTCAG  400

seq1  ACGCTCATTTCTGATGGCTCCTGAACTAGTCTGCTACTGGAATTGTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCATTTCTGATGGCTCCTGAACTAGTCTGCTACTGGAATTGTGGTG  450

seq1  GGGATAGGAATACTTCTGCCTCCCTCCAGCCTGTGGCAGGATCTGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGAATACTTCTGCCTCCCTCCAGCCTGTGGCAGGATCTGACAGT  500

seq1  GCTGGCAAAGAACCCCTTTCCTTTCTACACTGTAGCCTGCCTGAGTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAAAGAACCCCTTTCCTTTCTACACTGTAGCCTGCCTGAGTGCCC  550

seq1  TGGGATTCCCTGGATGGTGCTGTTGAAAGCTAGAGCTTGTAGAGTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCCCTGGATGGTGCTGTTGAAAGCTAGAGCTTGTAGAGTGCCTT  600

seq1  TCTCGGGCCTGCTCCTTTCAGTAGGCTTTTGTTTACAGACCCTGTGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGCCTGCTCCTTTCAGTAGGCTTTTGTTTACAGACCCTGTGGAGG  650

seq1  GTGGGAGGAGGATGGGCCCTCAGGACATGAACA-TTTGTGGTTCCT-CCC  698
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  GTGGGAGGAGGATGGGCCCTCAGGACATGAACATTTTGTGGTTCCTCCCC  700

seq1  AG-CCCACCCCCCATTACCCACTAGGGCTTCCTTCATGAAACTTCA-GCC  746
      || |||||| |||||||||||||||||||| ||||||  || |||| |||
seq2  AGCCCCACCTCCCATTACCCACTAGGGCTTTCTTCATTGAAATTCATGCC  750

seq1  AAAGACTAGCCATAGCCT--CTTTCAGAATTGCAAGCTGTTCTCAGAAGC  794
      ||||||||||||||| ||   |||||||||||||||||||| | ||||||
seq2  AAAGACTAGCCATAGTCTTCTTTTCAGAATTGCAAGCTGTTTTTAGAAGC  800

seq1  CTCCGTTTCTCTA  807
      ||||| |||||||
seq2  CTCCGGTTCTCTA  813