BAC Information

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BAC

Clone NameMSMg01-047D19
Chromosome15 (Build37)
Map Location 10,066,468 - 10,066,892
singlet/doubletsinglet
Overlap genenone
Upstream geneSkp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047D19.T7 (MSMg01no047_d19.b1)MSMg01-047D19.TJ (MSMg01no047_d19.g1)
ACCAG277395AG277396
length703715
length of high quality
(start - end)
427 (45 - 471)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no047_d19.b1 PHD_FILE: MSMg01no047_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:33 2005CHROMAT_FILE: MSMg01no047_d19.g1 PHD_FILE: MSMg01no047_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCCAGCTTGGGCTACACAATAGGATTTTGCATAAAAATGAAGA
AACGAATAAAACCAGAAAGCAGCTCCGAACTACATGCTCATCTCCTGAGC
CATTTCCCTTGTTTGACTTGCTGGGGGACTATTGAAATAAGAAGAGTTTG
TGATCAGATCAACTTGTGGTTCATTCTTCATCTGAAGGAACATTCCCAAT
AGCTAGAACTGAGTCTTTAAAATGTCCCAGAAAACGATGTGTAGGCTCCC
CACAAAGGGATGTAGAGAGAAAGGGTTCTTGGAATTGTGATTGGAAAAAG
TTGTCCTTAGACCTTCTAAAAGCCTTCTGTGTCTACCATGAATTCTTTCT
GATCACCCCCCCCCCTTGCCTTGGGATGTTGGTTTCCAGGAGCTTGACAG
AAGATGTAACTACCCCACCCAAGGTTTTAACTGAGTCACAGATGTGCAAG
TGCCTGCAGAGTGCTTGGCAGGGTAGATGCTATCTAATTGCATTGAATTA
GTCCAAAAGGCTTATCTGGAATCACACAGCTATAGAAGACAAGTCTACCC
CCGATGACTTATAGGCCCACCCTATATATATGATCACTTGGCAAGAACTA
TTTTGTGTTGCATCATCTGCCCCGTTATCCCCCTATTGTAAGCTCTTTTC
GGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGAGAGGCCTAGATCTTCCTA
AAAAGTGGGGTTCTAAAGAAAACTATCCCAAGAAACACTAGAAGAAAGGT
CTGAAGCGTCTTAGAGATTTTCTAAACAATTACAACCAGAAATTTGGTTG
CAATATGGTCAGTAAAGCCAATTCTGATTAGAGTTCACATGAAAATGTAT
AACACATTATTGAAAACTGGAGTAAATGCTATCCTTGTAATCCAATAGCT
GGGAACTCAGATGGCCAGTGTCAAGGCCCAAGTGACTTATGGAATGCAGA
ATGATGAACTAGCATCTGGCGGACGAAATTACTAATGAAAACACTGAAGG
AACAGTTTGGCTTCTAATATCCACATAGGATAAAAGAGAAAATTTGAATT
CAAATGTTTAAAAACCTTTAAAATTTTTCATTTACATGTAAAAGGAAGGA
AAATAAATGAAAATGGATTATCCCCTGCCTTGGTCACATAAAAAACATAA
AAGTGTGCAATGGCACCGCTAAGTATCCTCCCTATTTTGAGCATTTTATT
GTCCCACGAGTAGTTTCGTATCTATTCCCTCCCACTACTACCGACCTCTG
AACCGACCCCGTTAGGCTATTTCATTCTATCTTTTGGAAAAAGTCAACTT
GGGTAATCCACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_d19.b1 MSMg01no047_d19.b1 CHROMAT_FILE:
MSMg01no047_d19.b1 PHD_FILE: MSMg01no047_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:33 2005
         (427 letters)



>mm_chr15_10066214_10067042
          Length = 829

 Score =  760 bits (393), Expect = 0.0
 Identities = 417/425 (98%), Gaps = 2/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggccagcttgggctacacaataggattttgcataaaaatgaagaaacgaata 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaatgccaggccagcttgggctacacaataggattttgcataaaaatgaagaaacgaata 620

                                                                       
Query: 65  aaaccagaaagcagctccgaactacatgctcatctcctgagccatttcccttgtttgact 124
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 619 aaatcagaaagcagctccgaactacatgctcatctcctgagccgtttcccttgtttgact 560

                                                                       
Query: 125 tgctgggggactattgaaataagaagagtttgtgatcagatcaacttgtggttcattctt 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgctgggggactattgaactaagaagagtttgtgatcagatcaacttgtggttcattctt 500

                                                                       
Query: 185 catctgaaggaacattcccaatagctagaactgagtctttaaaatgtcccagaaaacgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 catctgaaggaacattcccaatagctagaactgagtctttaaaatgtcccagaaaacaat 440

                                                                       
Query: 245 gtgtaggctccccacaaagggatgtagagagaaagggttcttggaattgtgattggaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgtaggctccccacaaagggatgtagagagaaagggttcttggaattgtgattggaaaa 380

                                                                       
Query: 305 agttgtccttagaccttctaaaagccttctgtgtctaccatgaattctttctgatcaccc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 agttgtccttagaccttctaaaagccttctgtgtctaccatgaattctttctgatctccc 320

                                                                       
Query: 365 -ccc-ccccttgccttgggatgttggtttccaggagcttgacagaagatgtaactacccc 422
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcccaccccttgccttgggatgttggtttccaggagcttgacagaagatgtaactacccc 260

                
Query: 423 accca 427
           |||||
Sbjct: 259 accca 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 829
Length adjustment: 9
Effective length of query: 418
Effective length of database: 820
Effective search space:   342760
Effective search space used:   342760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)