MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-049L19
Chromosome	15 (Build37)
Map Location	75,945,691 - 75,945,901
singlet/doublet	singlet
Overlap gene	Eppk1
Upstream gene	I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2
Downstream gene	BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9
Link	Open Mouse BAC browser

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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-049L19.T7 (MSMg01no049_l19.b1)	MSMg01-049L19.TJ (MSMg01no049_l19.g1)
ACC	AG279077	AG279078
length	1,294	1,263
length of high quality (start - end)	82 (140 - 221)	211 (130 - 340)
definition	CHROMAT_FILE: MSMg01no049_l19.b1 PHD_FILE: MSMg01no049_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:04 2005	CHROMAT_FILE: MSMg01no049_l19.g1 PHD_FILE: MSMg01no049_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:04 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTCAGT CTACCAAGGCCCCCTTTAGATACCTTTGCAGAGNAGCTCCAACACCCACC CTCCCTCTATGACTGCCTCCCCCCGCTACATAACCCCATGGATTCAGGCA TCACCCCCACTTGCCCAGATCCATAATCTCACATGGTGACCAAGGGACTG TAACCAGGGGCCAGTGCCGGGTGGATGGTAGAGATGCCTGAGTTATCTTT CATGACATACCTAAGCTGGGCGGTCTCAGAGAACCTTCCATCTTCCAGGA AGAGCCTAATAATGAAATGCAAAGACCCATGGCAGTGTCTGGGCATCTCT GATGGTCCTTCCGAGCCACAAATCACATGAAACCTGCTCCAGTCCGGAAT CATTGTCCCTAGCTGTCTTTGAATGCAAAGGTGGGGTCAGACGCTGACCT CACAATGGCAGAGCCTCTCTTTCCTGGCTAGTCCACAGACCACTGGCCAG CCGCTGTGCTCCTCCTGGGCATGTCCCTTCTCAGCAGCTATCAGGGCCTA CGACAGGCAATCCAGAGGCTGGCCCAAGAGAATGAGGAACTACGGCGCCT GGCGCAGCTCATCCAGGAAAACCAAGATCTGAAGCCAGTCCTTATTAGTA GCGTCTATAGCCTAAGCTTCCCTATTGCCAACTTCCTGTCATAAACAACT GCCACTCCCAGTCTGCCAAAGCCGAAAACCCATCATATCCCTGGTCTGTC TGATAGAGTTGATCCACGGTCTTTCCTTCTGAATTCTCTTAACCTACGTG TGCCCCATCTTGGTATCCCTTAACCAGTCTTGTGTCCATATCTAAATTCC CCTTTATCAGCCGTATGTCTCATCATAACTATTCTTATTCCTTCTTTTCC CCCTTTATAAGTTTCCTTTATCCTCTCCTGTTACAAAATTTTAATCTCTC TTTTCCCATTTGTATTTCCCAATCATAGTTTCTCTTTATTCTATCCTGTC TCTCATTCAAAATTTTTTTTAATCTTTATCTGGTGTCCCATCATTTAAAT CTCCTCTTTTACTAATAAATCANCAATTATAATTATACCTTATACCTTTT ATATATTTCCTTCTCTAAATCCATTCTTTATTCTTTGCATTTCGCCCCTA TCCTTATTATTTCTCTTTTCCTACCTTACTTTTCCTTTAAATAAATATAC ACACTATGTATCATAAATTTCCTTCCTTAGCTCGTCAATTCATCTACATT TTCTATATTACTATTAATCATATACTACTATANCNCTTAATTTA	TTATGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXCCCCTTTAGGCCCACCAGCCACCTGCCTCTGCCTCCCGAG TGCCGTTACTAACGGCGCCCCCACAACCAGTCTGTTCTTAAAGGCGCGTC AGTGGGGATAGCTGCCTGCTGGATGTCTACTGGTCTACCTCACGCCCATC TAAGCCCTTGTGGTCTTGCCGTGGCACCTCAGAGTTCATCCTGTCATCTC TCAGCCAGACTTCCTGTGCCCCTGCCTTCTGCATCCTGTACATAGGAGTC CCCCACATCACCACCTTTAAGGCTCCCCCCTAATGCGATACCACCTGCAT AATGTGGAGCACAGGTAAATGGTAGCGAGCTTGGCTCGCTGCTCATTATG TCCAAGGCAGGTGCATAACCTATTCTGTGCATGATAAGTCGGGCTCCGCC ATCACATGACCTGCCAGAATACACACTGAGTAGTTCTAATCTGACAGGTA CCTGCATACGGTCAGCAGTGTCCACCACCAATCCTGTCCCAGAGCATGTT GAGCCTATCACGCCAGCATCAGGTCCACCACTCAGCTCTTCTAGGTTCTG CATATGCTCTTGCCTTACAGCTTGTTGTATGTTTAATACCCTCAAGATTC TATATGCAAGTTCTAAGCGTACTTTTGACTGAAAATGTTCATTTTTCAAT TTGTGAGCTACGGTTCATTCAGTCATGTTGCTTTATGGACCGTCTTTCTT AATTTTGAATCTTCTTCTTGGTATTACATTCATTCGTCTCTTTATGATTC TCAACCTTCGGTTTATTATATCTTCTCTTTAATTTATAATTGCCATTCTT CTTTATTTTCTTCAATTTTTTATCTTCTTTCAATGCTACTTTTATTCTTT GTATTTTCTTCTATTTTATTAATTTCTTGTTTCTTATTATTTTTTATTAT ATTTATTTTCTCTTTTTTCTTCTTTTCCGTTTCTTTATCTATTTTCTTAT TTTTTCTTATACTTTTTTTTTGTTTCTATTCACACTTTTTCCTATCTTTT TTTTTATCTTCTCTTTTTTTTCTAATTTCTTTCTCTATAGATTTTCNTAT ATATTTTTTTTATTTTATATCTCTTTTTTTATTTATCTTTCTTATTCATT TTTTTTCTTTCGTTACTAATATTTCATTTATATTTCTCCTCTATTATTCT CCATATTATAATCTATTTTTTAATATCCCTTCNATCTTTTCTCTATTCGC ATACTCTATTATA
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Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no049_l19.g1 MSMg01no049_l19.g1 CHROMAT_FILE: MSMg01no049_l19.g1 PHD_FILE: MSMg01no049_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:04 2005 (211 letters) >mm_chr15_75945491_75946101 Length = 611 Score = 377 bits (195), Expect = e-109 Identities = 207/211 (98%) Strand = Plus / Plus Query: 1 gtctgttcttaaaggcgcgtcagtggggatagctgcctgctggatgtctactggtctacc 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 201 gtctgttcttaaaggcgcgtcagtggggatagctgcctgctggatgtctactggtctacc 260 Query: 61 tcacgcccatctaagcccttgtggtcttgccgtggcacctcagagttcatcctgtcatct 120 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 261 tcacgcccatctaagcccttgtggtcttgccgtggcacctcagagttcatcctgtcatct 320 Query: 121 ctcagccagacttcctgtgcccctgccttctgcatcctgtacataggagtcccccacatc 180 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 321 ctcagccagacttcctgtggccctggcttctgcatcatgtacataggagtcccccacatc 380 Query: 181 accacctttaaggctcccccctaatgcgata 211 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 381 accacctttaaggctccaccctaatgcgata 411 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 9 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 211 Length of database: 611 Length adjustment: 9 Effective length of query: 202 Effective length of database: 602 Effective search space: 121604 Effective search space used: 121604 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no049_l19.g1 MSMg01no049_l19.g1 CHROMAT_FILE:
MSMg01no049_l19.g1 PHD_FILE: MSMg01no049_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:04 2005
         (211 letters)



>mm_chr15_75945491_75946101
          Length = 611

 Score =  377 bits (195), Expect = e-109
 Identities = 207/211 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctgttcttaaaggcgcgtcagtggggatagctgcctgctggatgtctactggtctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctgttcttaaaggcgcgtcagtggggatagctgcctgctggatgtctactggtctacc 260

                                                                       
Query: 61  tcacgcccatctaagcccttgtggtcttgccgtggcacctcagagttcatcctgtcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacgcccatctaagcccttgtggtcttgccgtggcacctcagagttcatcctgtcatct 320

                                                                       
Query: 121 ctcagccagacttcctgtgcccctgccttctgcatcctgtacataggagtcccccacatc 180
           ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct: 321 ctcagccagacttcctgtggccctggcttctgcatcatgtacataggagtcccccacatc 380

                                          
Query: 181 accacctttaaggctcccccctaatgcgata 211
           ||||||||||||||||| |||||||||||||
Sbjct: 381 accacctttaaggctccaccctaatgcgata 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information