BAC Information

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BAC

Clone NameMSMg01-050I01
Chromosome15 (Build37)
Map Location 53,112,354 - 53,112,656
singlet/doubletsinglet
Overlap geneExt1
Upstream geneSlc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631, Tnfrsf11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050I01.T7 (MSMg01no050_i01.b1)MSMg01-050I01.TJ (MSMg01no050_i01.g1)
ACCAG279565AG279566
length1,2091,095
length of high quality
(start - end)
398 (71 - 468)303 (15 - 317)
definitionCHROMAT_FILE: MSMg01no050_i01.b1 PHD_FILE: MSMg01no050_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:54 2005CHROMAT_FILE: MSMg01no050_i01.g1 PHD_FILE: MSMg01no050_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATGGCGCTAACNATCCTAAGGGAGAGGATCCGCGGAATTCATTATCTG
GAATCCAGACTTTTACTAACATGAAAATGAGAGCTGGGTATGATAGCCCA
CCCCTTTAATCCTAGCACTTGCGAGGCAGAGACAGGTGGTTTAAGGCTAG
CCTGGTCTACACAATGAGTTTTAGGACAGCCAAGGCTACACAGAGAGTCC
CTGTTAAAAAAACAAAACAAACGGAGCTAGAGAGATGGCTCAGTGGTTAA
AAGCACTGGCTTTTCTTCTAGAGGTCTTAAGTTCCAGAAACTACATGGTG
GCTCACAAGCATCTATGATGTGATCTGCTGCCTTCTTTTGGTATGCAGGT
ATACATGTAGACCGAGCATTTAAAAAAACAAAGCATAAATAAATATTATC
CACAGAAACCAAATAGACACAAAACAAAGAACAGAAAACACACACCCACA
CACACACACACACACACACACACCACACACACCCACACACGCAGAAAGAC
CAAACCGAGCAGCAGCGCTGGTGTCTATCTCTTCTTCACTTTTGCTTTAT
TTTTACGCAGGCAAGATTCCCTGCTCTTGCTAACGCACTGGAATTAAGGG
CCCTGCAAGGAACAGCTTGCAAGGGGAACCCCAAGCCTTCTCAAGTACTA
GATTCTGTTCTATTTCCCCGACTGCAATTATCTGGAATCAGAGCCCTTCT
AAAAAGGATAAGAGAAGATATACCCACAACCCTGGTGCCTACGCGCTCCT
TGTTCCATTTATTTTTAACCCGGCCAACTTGTTTCAAGGGAATGTCGGTA
ATAAGCACGTGGCTACGCCATTTTTTAAAGGTGAAATTGGACGTCAGGTA
AGAAAAGTTTATTTTAAGCCCTGTTTTGACTTTCGTCTCCCTTTTGTGTG
GTGGAATTGGAGTTATATACCGTAAACCTATAAATTTGTCTCCCATTCTT
CTAAAATTGTTTTTCAAAAAATTCTCTATGATATTGCCTTGTCTTCCTTA
CCCCCTAAACTTTGGAATTTCAAAATCTTTAATTTATATTCTCCCCCCCT
CCACTATTTTGGTCCTCCTCTGTTAAACCCTCCACATTGCATTTTCCCCC
ACAAAAGGGGGTGGTGTTCTCCCGCTCCTCTCCTACACCTCAAAAATGTG
GAACCTTCTCTTGGGATACGTTCTCCTGTGCGCTAATCTATCCTTTCCCT
TGTCATCGA
CCTTAACAGACCGGTTACTTTGAGGGTCAGAGGGGCACATGCCCTCATGA
CCATCTGCCTATTTTCTGGCAGCTCACGATGGCGGACAGATGTGCGGTGT
GAATTGAGCCACACAATTGGTCACTGTGCTTGGAAGTGTAGAATTATATG
TCTCAAATATATCTAGGAAGGGCTGTCCAGCCAGAAGAACAGGCAAAGGT
ATACTAGAATTAAAGCATAATTAGTGCCCCATAATTTAGCTACTTTGCTA
TGGACTTTTTAATGTTAGACAGGAACCACAATTGGATTCTCAGAAACCTT
GCTTCAGCTCTAAATATCAAAGACTAACTGCATGGTTTTCCCTATCCTTA
ATGGAGAGAGTGATATGACCCGTGTCAGCATTGGGGACCAAGCAGAGAGG
AGGGTCTCATTTACATAGCTGGTTAGTTCCCATGCATTTAACCCCAGCAT
TAGTGAGGTCCCAGATATGGTCACCTAGTCTGCCTTCCTGCTCTCCATGC
TTCTCTTCTTCTAGACAAACCCAGCGTGTTTTCTCTAGCTTGCATGAACT
CATAGTTCCTGCTTTTGATACTCGTTATTTATGGATATATTTGATTCTTG
TGCCCGATTCTTTTACTTAGATATTTGCAGTGCTTGCCGAATAATTGTTG
TTGTTCGATTGCTTGCTCGTTTGCTTGTTTCCTCCAAACAGACTCTTTTT
CTTTGGTGACCAGATCTGTTCTTCTAACTCAATCATATTTGCCTGGTTTC
TCCCTCCCCAGTCTTCTTACTTCTCTATTATTTTGTACATATACATGATA
CAATTCCTTTTTACCCTTGTCATGGCTTTCCCCCATCCTTAGACACCCCT
CCTATGTCTTTTTTATTATATCTCTTACTTCTTCCCTCTTCTCCTATTTT
AGGTTTATCCCCCTTTCATTCATCCTGTATTTTTTCATTTTCCTGAACTC
TTTATGCCTCAACTTCTCATATATAGTTTTTCTTTCTTCCTTTCAATAAT
TTTCTTGTCTCCATTTTCTAATACTCCTTTTTATGTAATTTTACTCTGTC
TTCTTGGCTACCATTTCACCTCACCTATATAAAATTATCTCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_i01.g1 MSMg01no050_i01.g1 CHROMAT_FILE:
MSMg01no050_i01.g1 PHD_FILE: MSMg01no050_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:54 2005
         (303 letters)



>mm_chr15_53112154_53112856
          Length = 703

 Score =  495 bits (256), Expect = e-144
 Identities = 292/304 (96%), Gaps = 2/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactttgagggtc-agaggggcacatgccctcatgaccatctgcctattttctggcagc 59
           ||||||||||  || || |||||||||| |  |||||||| ||| || ||||||||||||
Sbjct: 503 ttactttgagtatcaag-ggggcacatgtcagcatgaccacctgactgttttctggcagc 445

                                                                       
Query: 60  tcacgatggcggacagatgtgcggtgtgaattgagccacacaattggtcactgtgcttgg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacgatggcggacagatgtgcggtgtgaattgagccacacaattggtcactgtgcttgg 385

                                                                       
Query: 120 aagtgtagaattatatgtctcaaatatatctaggaagggctgtccagccagaagaacagg 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtgtagaattatatgtctcaaatatatctaggaagggctgtccagccagaagaacagg 325

                                                                       
Query: 180 caaaggtatactagaattaaagcataattagtgccccataatttagctactttgctatgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaaggtatactagaattaaagcataattagtgccccataatttagctactttgctatgg 265

                                                                       
Query: 240 actttttaatgttagacaggaaccacaattggattctcagaaaccttgcttcagctctaa 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 actttttaatgttagacaggaaccacaattggattctcagaaatcttgcttcagctctaa 205

               
Query: 300 atat 303
           ||||
Sbjct: 204 atat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)