BAC Information

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BAC

Clone NameMSMg01-051C11
Chromosome15 (Build37)
Map Location 69,833,164 - 69,863,564
singlet/doubletdoublet
Overlap genenone
Upstream geneKhdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051C11.T7 (MSMg01no051_c11.b1)MSMg01-051C11.TJ (MSMg01no051_c11.g1)
ACCAG280013AG280014
length1,2551,286
length of high quality
(start - end)
474 (47 - 520)317 (86 - 402)
definitionCHROMAT_FILE: MSMg01no051_c11.b1 PHD_FILE: MSMg01no051_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:26 2005CHROMAT_FILE: MSMg01no051_c11.g1 PHD_FILE: MSMg01no051_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,833,164 - 69,833,628)(69,863,308 - 69,863,564)
sequence
NATTTTTTTNNNNGTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTTAATTTTGATTTCTTCTTTTATGTGCTCAAATTTCTGCT
TAAACATGGTTTTATTGATTTGTAATGTTTATTGTCATGAACCATCAGAT
CCCCATGGTCATTTTAAACACAATGTGTTGGCACTTCAATATTTATATCT
CCTGAGAGAGTTCTGTTTTCTTTTGACTTTTGAGACAGGGGTTCTCTTTG
TAGCCCTTACTGTCCTAGAATTCACTGTGTAGACCAGGCTGGCCTCTAGA
AATTCACCTGCTTCTGCCTCAGAAAAATATATAACACATTAAGTTTAAGG
GAAAAAAACCTACACTAGCAAAAATTTTAATTGAATGCCATGAAATTATC
TGCAGATTATTTGAGATTTCTGATGCTGTCTTCTTCCTCACTTAGAGTCT
ATTTCCTCTTCTTCTGAACAGTTCAAGCTAGGACCAGCTCCTCTTTCATT
CATTCGGATATGAGTCTTACTTGAAACTCCAGTGCACTCCTTGTGGGATC
TCATCCCATTCTTTTCATGCATTCTACGATATACACCTTCCTTGAGGAGG
GCCTGCATTTGTTGCAGACTTCCCTCATAGAGTTCTCTAACGTATCCCTT
CGCCATCTGACTAGCTATTGTATGATCTTAGATTTTCAGGATCTTACTTA
ATTCTATCCTATACATATTCCTGTTATTGCTAATTGTATTAATTCCTTTT
CACATGTATTAAATTCCCTTGCTTATATTTACTAACCCATAATATCTTCT
TTTTTTATGAATTTCCTTTCCTTTCTTAACAGTTTCTGTTTCTCTCCCTT
TTTTTTCTTATATCTTTTTTTCTATATTCCTTTCCTATTCTATCTTTTTC
TTCTTAATTATTTTAAATTTTCTTATATTTCAATATTTTCTTCTCCTTTT
CTTTCTTTTCTTATTCATTTTTTTCTTTTTTTACTTTCTTCGTTTTTCTC
TTTTCTTTATTTTTTTTTCTATCTTTCCTTCATTTATTTTTTTTTCTTCA
TCTTTTTTTTTTCCTATTTTCTTCCTCTTTTCTTTCATTTTTCTTATTTT
CTNTTTTATTTCCTCTTCTTCTTTCTCTTTTTTATTATTAATTTCCTTAT
CTACTTTTCTTTAGTTCCTCTTCTTTTTTTTTTCCCTCTTTTTCTTTCTT
TTCTTTTATTATTATTTTTCCTCTTTTTTTTATTATTTCCATTTTGTCTC
TATTT
NCGGGTTTTTTTNNAAACTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTCTCCTGACGCTACACACAC
ACACACACACACACACACACCTTCACACACACACACACACACACACAAAT
GGGGACTGAAGAGATGGATGGGATGGTCGTCATCACTAGTCCTCGAGCTG
GGAGTATGCCTAGGAGATGTGACTATTTTCTAGCAGGTGCTGTGTGTTCA
CAGCGGAAGGCTAGAATGAATAGGGAATGTGACCTTTTGTGTACATAAGT
TCAGCTATGCTGGCCTGATTCTCCTATTTTAAAAAGATAAAGAAATTCAT
GCATCTGTTAACAAGCATGTCCTCACAAACCTCAAACCCACCTAACAATA
CCGAATCACTTTCTTTACTTGCCTAGTCTCTCTCAGTGTGCTTCCAGAGA
ATATTTCTAGAGATTGTTTTCTTTCACTCCTAATAACATATGTAAGGATA
AGACGCGACCCCCGTTTCTCTGTCAGAGAAGACTAGAGTTAACACCTGCA
CCAGTCTGAAACTGATCACCCTCTACCATCATTCCTCTAACTTGCAAAGT
ATAGCTGCTGAAACATTGCTTTGAATAATGCTTGGCTTTTTCTTCATCAT
CGTCTCTTTCCAGTCTTGATGTTTTGTTTCATCTGTCTTTCTTTATTGAT
CTCTTGTCCCTTTGTTTGCTTCTACTGTTTCTTCTATTTTATATCTTTGT
TATGCTATTCATTTCATCTCCTTTTTTTTCTCCAATTATTCTTTTTTTTT
TTTTGTGTTATCTTACTTGTTTTTTATTTATCTTTCTTTTTTTTTCTCTT
TTTTTCTTTTATTTTTTTCTTTTCTTTTCTTTATCTTTTTCTTTTTCTTT
TTTTTTTTTTTTCTTTGCTTTTCTTTTTTTTTTTTTATGATTCTTTCTTT
TTCTTTTCTTTTTTCTTCTTTATCTTCACTTTTCTTTTTTTTTTTTTTTT
ATTTTCTACTCTTTTTTTATTTGTCTTTTTCTTTCTTCTTTTTTTTTTTA
TTTTTCTTTCCTCTCTTATTCTTTTTCTTTTCTTCTCTTTCTCTTTTCTT
TTTTTCCTTTTTTCTCTTATTATTCTTTTTTCTTTTTTTTTATTTTCTCT
TTTTTTATTCTTCTTTTATTTACGTTCTTCATTCATCCTCTCTTTCCTTT
ATTTCCTACCCGTGATTTCTCTAAGCTTATTCTCTTTTTATCTTCTCTTT
CTTCCTCTTGATCTTCTTTCTTATTTGTATCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_c11.b1 MSMg01no051_c11.b1 CHROMAT_FILE:
MSMg01no051_c11.b1 PHD_FILE: MSMg01no051_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:26 2005
         (474 letters)



>mm_chr15_69832956_69833829
          Length = 874

 Score =  770 bits (398), Expect = 0.0
 Identities = 449/466 (96%), Gaps = 2/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcttaattttgatttcttcttttatgtgctcaaatttctgcttaaacatggtttta 68
           ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 209 gaattcttaattttgttttcttattttatgtgctcaaatttctgcttaagcatggtttta 268

                                                                       
Query: 69  ttgatttgtaatgtttattgtcatgaaccatcagatccccatggtcattttaaacacaat 128
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 269 ttgatttgtaatgtgtattgtcatgaaccatcagatccccatggtcattttaatcacaat 328

                                                                       
Query: 129 gtgttggcacttcaatatttatatctcctgagagagttctgttttcttttgact-tttga 187
           | ||||||| |||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct: 329 gcgttggcatttcaatatttatatctcctgagggagttctgttttcttttga-tgtttga 387

                                                                       
Query: 188 gacaggggttctctttgtagcccttactgtcctagaattcactgtgtagaccaggctggc 247
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gacaggggttctctttgtagtccttactgtcctagaattcactgtgtagaccaggctggc 447

                                                                       
Query: 248 ctctagaaattcacctgcttctgcctcagaaaaatatataacacattaagtttaagggaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctctagaaattcacctgcttctgcctcagaaaaatatataacacattaagtttaagggaa 507

                                                                       
Query: 308 aaaaacctacactagcaaaaattttaattgaatgccatgaaattatctgcagattatttg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaaaacctacactagcaaaaattttaattgaatgccatgaaattatctgcagattatttg 567

                                                                       
Query: 368 agatttctgatgctgtcttcttcctcacttagagtctatttcctcttcttctgaacagtt 427
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 568 agatttctgatgctgtcttcttcctcacttagagtttattttctcttcttctgaacagtt 627

                                                         
Query: 428 caagctaggaccagctcctctttcattcattcggatatgagtctta 473
           |||| ||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 628 caagttaggatcagctcctctttcatttatttggatatgagtctta 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no051_c11.g1 MSMg01no051_c11.g1 CHROMAT_FILE:
MSMg01no051_c11.g1 PHD_FILE: MSMg01no051_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:26 2005
         (317 letters)



>mm_chr15_69863046_69863759
          Length = 714

 Score =  410 bits (212), Expect = e-119
 Identities = 247/260 (95%), Gaps = 3/260 (1%)
 Strand = Plus / Minus

                                                                       
Query: 58  acacaaatggggactgaagagatggatgggatggtcgtcatcactagtcctcgagctggg 117
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 519 acacaaatggggactgaagagatggatgggatg---gtcatcactagtcctcgagctggg 463

                                                                       
Query: 118 agtatgcctaggagatgtgactattttctagcaggtgctgtgtgttcacagcggaaggct 177
           |||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||
Sbjct: 462 agtatgcctaggagatgtaactattttctagcaggtgctgtgtgttcacggtgggaggct 403

                                                                       
Query: 178 agaatgaatagggaatgtgaccttttgtgtacataagttcagctatgctggcctgattct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agaatgaatagggaatgtgaccttttgtgtacataagttcagctatgctggcctgattct 343

                                                                       
Query: 238 cctattttaaaaagataaagaaattcatgcatctgttaacaagcatgtcctcacaaacct 297
           |||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||
Sbjct: 342 cctattttaaaaagataaagaaattcatgcttctgttaagaagtgtgtcctcacaaacct 283

                               
Query: 298 caaacccacctaacaatacc 317
           |||||| |||||| ||||||
Sbjct: 282 caaaccaacctaaaaatacc 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 714
Length adjustment: 9
Effective length of query: 308
Effective length of database: 705
Effective search space:   217140
Effective search space used:   217140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)