BAC Information

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BAC

Clone NameMSMg01-052F08
Chromosome15 (Build37)
Map Location 47,640,563 - 47,641,044
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052F08.T7 (MSMg01no052_f08.b1)MSMg01-052F08.TJ (MSMg01no052_f08.g1)
ACCAG280848AG280849
length679682
length of high quality
(start - end)
468 (63 - 530)482 (69 - 550)
definitionCHROMAT_FILE: MSMg01no052_f08.b1 PHD_FILE: MSMg01no052_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:55 2005CHROMAT_FILE: MSMg01no052_f08.g1 PHD_FILE: MSMg01no052_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTATACGACTCCTATTTCAAGAGGACCGCGGATTCT
ATCAATTCCCATGGAAGACTTGATACCAATTTTCCTCAACTATTCCATAA
AATAGAAACAAAAGGGTTACTATCTAATTTGTTCTTTGAAGCCACAATTA
CTCTGACAGCTAAACCACACAAGGACCCAACCAAAAAAAGAGAACTTCAG
ATCAATCTTGCTTATGAATATTGATGCAAAAATACTCAATAAAATCTTTG
CAACCCAAAACCAAGAACATATCAAAACCATCATTCACCTTGATCAAGTA
GGCTTCATCCCAGGGATGCAATTTTGGTTCAATATATGAAAATCCAATAA
CATAATCCACTATATAAACAAACCCAATGAAAACAATCACATGATTATCT
CCTTTGATGCAGAAAAAGCATTTGACAAAATACAGCACCCCTTCATGTTA
AAAGTGTTGGAGAGATCAGGAATTCAAGGCCCATACCTAAACTTAATAAA
AGCAATTTACTGCAAACCAACAGCCAGTATCAAATTAAATGGAGACATAC
TTGACACAATCCAGCTGATATCAGGAAAAAGATAAGGATGCCCACTCACC
CCAAACCTATTTAATATAGTAATCAAAGTGCTAGTTACTATAAGACGACT
ATACGAGCGTCAAGACCAAACACCAGTGT
CATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGAGTTGGGGATGTGGCTATCTCAGCAAAAT
GGTAAACACTCAGACCTTCAGGACAGCCCTTGAGGCTATTTGAAAGAGTT
CTAAATAAATGTGTTCAAAACTTTATAATCTCTCATTTATGCAAAAAATA
AGGATGAAGTATGAATTAAATGAATTAAATGAGGGGCTTCACAAATCTAA
TGCAACAAAAGCAGCTGCACTATGAGCCAACTTGTTAGACATTACTAAGG
AAGGAGATAAAAAGATAATAATACCATTTTGGCACCTTCATGGTATAACT
AAGGACTTTTTAAAACAATTATCTTTAAGCAGAGAGGATTATAACCTAGA
AGTAAGCACTTCCATGAGGGAGACTTTAACTTTCTTTATACTAGAATTAT
TATGGAGTAAGAGTTATAAATATAATCAAAGTAAAACCACAGACGTATGA
ATAATGCCTATTGAAAATTATCCAAACAAACATAAAAATAAATAAAAGCA
AGTCAAAATAAAAACAAATATAAAGATCTTTGCACAAATACGAAAAAGGA
AATTGAAGGAAAACTGTTTCTTTACTTCCTAGTTTAAGCTATACTACACA
ATACTGCACAGCGAAATACAAAGGACCCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_f08.g1 MSMg01no052_f08.g1 CHROMAT_FILE:
MSMg01no052_f08.g1 PHD_FILE: MSMg01no052_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:55 2005
         (482 letters)



>mm_chr15_47640363_47641244
          Length = 882

 Score =  886 bits (458), Expect = 0.0
 Identities = 476/482 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagttggggatgtggctatctcagcaaaatggtaaacactcagaccttcaggacagcc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aggagttggggatgtggctatctcagcaaaatggtaaacactgagaccttcaggacagcc 260

                                                                       
Query: 61  cttgaggctatttgaaagagttctaaataaatgtgttcaaaactttataatctctcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaggctatttgaaagagttctaaataaatgtgttcaaaactttataatctctcattt 320

                                                                       
Query: 121 atgcaaaaaataaggatgaagtatgaattaaatgaattaaatgaggggcttcacaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcaaaaaataaggatgaagtatgaattaaatgaattaaatgaggggcttcacaaatct 380

                                                                       
Query: 181 aatgcaacaaaagcagctgcactatgagccaacttgttagacattactaaggaaggagat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaaacaaaagcagctgcactatgagccaacttgttagacattactaaggaaggagat 440

                                                                       
Query: 241 aaaaagataataataccattttggcaccttcatggtataactaaggactttttaaaacaa 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 aaaaagataaaaataccattttggcaccttcatggtataactaaggactttttaaaaaaa 500

                                                                       
Query: 301 ttatctttaagcagagaggattataacctagaagtaagcacttccatgagggagacttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatctttaagcagagaggattataacctagaagtaagcacttccatgagggagacttta 560

                                                                       
Query: 361 actttctttatactagaattattatggagtaagagttataaatataatcaaagtaaaacc 420
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 actttcattatactagaattattatggagtaagagttataaatataatcaaagtaaaaac 620

                                                                       
Query: 421 acagacgtatgaataatgcctattgaaaattatccaaacaaacataaaaataaataaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagacgtatgaataatgcctattgaaaattatccaaacaaacataaaaataaataaaag 680

             
Query: 481 ca 482
           ||
Sbjct: 681 ca 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)