Query= MSMg01no052_p21.b1 MSMg01no052_p21.b1 CHROMAT_FILE:
MSMg01no052_p21.b1 PHD_FILE: MSMg01no052_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:46 2005
(466 letters)
>mm_chr4_116321330_116322195
Length = 866
Score = 857 bits (443), Expect = 0.0
Identities = 458/463 (98%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 4 gaattcacagagatctgcctgtctctgccttccaagtgctgagattaaaggcaggcacca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaattcacagagatctgcctgtctctgccttccaagtgctgagattaaaggcaggcacca 491
Query: 64 gggcccagcttatataattttttatatttactttctgtgtttttgagaagggttttcata 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 490 gggcccagcttatataattttttatatttactttctgtgtttttgagaagggctttcgta 431
Query: 124 tgtaatgcggtcttaccctgaacgtgtaggttgcacttggcctcagatgtgcacccttcc 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgtaatgcggtcttaccgtgaacgtgtaggttgcacttggcctcagatgtgcacccttcc 371
Query: 184 acttaactcaggaagtggatatttttggagatttgaaggcttgggcttttttggtttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acttaactcaggaagtggatatttttggagatttgaaggcttgggcttttttggtttttt 311
Query: 244 tattattgcttatttgtctgttttgccctccttttcaggctttgagctgagatccacctg 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tattattgtttatttgtctgttttgccctccttttcaggctttgagctgagatccacctg 251
Query: 304 atttgcctcccaagtgctgggattaaaggaacaagcaaccatgatgggctagcaacagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atttgcctcccaagtgctgggattaaaggaacaagcaaccatgatgggctagcaacagaa 191
Query: 364 tttttaatgcagaaaatagatctgggccaatataacatatttaggatgatttttaaaaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttttaatgcagaaaatagatctgggccaatataacatatttaggatgatttttaaaaag 131
Query: 424 aattattganaccgggagtggtggcacacacctttaatcccag 466
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 130 aattattga-accgggagtggtggcacacacctttaatcccag 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_p21.g1 MSMg01no052_p21.g1 CHROMAT_FILE:
MSMg01no052_p21.g1 PHD_FILE: MSMg01no052_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:46 2005
(597 letters)
>mm_chr15_41864383_41865382
Length = 1000
Score = 1011 bits (523), Expect = 0.0
Identities = 582/605 (96%), Gaps = 13/605 (2%)
Strand = Plus / Minus
Query: 1 tcttttcttcctgacccttatcttttctacttataattttgctttgaatgcataaatagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 800 tcttttcttcctgacccttatcttttctacttataattttgctttgaatgtataaatagt 741
Query: 61 aaagaccaaagaaatagggatatatatttaggagctttataccaagaaatttgccttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaagaccaaagaaatagggatatatatttaggagctttataccaagaaatttgccttgaa 681
Query: 121 agctgctattctgtggcaggaaaactatatcaagtttctattggattcc-tttttcaaaa 179
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 680 agctgctattctgtggcaggaaaactatatgaagtttctattggattccttttttcaaaa 621
Query: 180 aacaaaacaagacttcttatatctttaga-ttttgaaggttaaaact-at-aaaagcaca 236
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 620 aacaaaacaagacttcttatatctttagatttttgaaggttaaaactgataaaaagcaca 561
Query: 237 tctctctgca--caatgctttaagcagttgtgtgagatagtgagatttaagttttaaaag 294
|||||||||| | |||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 560 tctctctgcatgc--tgctttaagcagttgtgtgagataatgaaatttgtgttttaaaaa 503
Query: 295 cttctgttgtggatagtttgccactggaattgattgtgcagaagctctcttacagtgctt 354
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 502 cttctgttgtggatggtttgccactggaattgattgtgc---agctctcttacagtgctt 446
Query: 355 tactattaca--tttgacctgtcaccttgatgacatttcttgcccacatctgagaccatt 412
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactattacatttttgacctgtcaccttgatgacatttcttgcccacatctgagaccatt 386
Query: 413 tgtccttgtagccatgaccttgttatgaacagtgcttgcactcactgtgcagatgtccat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtccttgtagccatgaccttgttatgaacagtgcttgcactcactgtgcagatgtccat 326
Query: 473 gttttgcctatttgagcaacattacagtgccatcactcaaggcagttgaatgaggtgaac 532
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 gttttgcctatttgagcaacattacagtgccattactcaaggcagttgaatgaggtgaac 266
Query: 533 atagacatagcttcccccctttccccccttttttaaatgtaacaaataaccttttatgtt 592
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagacatagcttccccccttcccccccttttttaaatgtaacaaataaccttttatgtt 206
Query: 593 cccct 597
|||||
Sbjct: 205 cccct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1000
Length adjustment: 10
Effective length of query: 587
Effective length of database: 990
Effective search space: 581130
Effective search space used: 581130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
