BAC Information

Click to search

BAC

Clone NameMSMg01-053B05
Chromosome15 (Build37)
Map Location 14,139,940 - 14,140,341
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024, LOC100040033
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053B05.T7 (MSMg01no053_b05.b1)MSMg01-053B05.TJ (MSMg01no053_b05.g1)
ACCAG281396AG281397
length715699
length of high quality
(start - end)
406 (47 - 452)283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no053_b05.b1 PHD_FILE: MSMg01no053_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:53 2005CHROMAT_FILE: MSMg01no053_b05.g1 PHD_FILE: MSMg01no053_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGCAGTTCCGTACAGGTCCACAGAGGCAGTTGAAGCCATACTA
TAAAGAGAAGACAGAAGATCAGAACAAATTGTCAGAATTAGTTTGAGACC
TTGCAGAGCAATTCTGTGAAAAGCTGAAAGATGCTATTGATTAACATCTC
ACCAGAAAGAATTTTGATACCAGGTTTTGGAATTTTATTTGACCATCCAT
AGCTTCTGGGATGGTCCGTGCATGTACGTGTCCTGTATTTATAATTCTTT
GTATAAAAAACATTTTAATTACCTTACAGGGGAGTGATTACATATGACTT
CTTACATCAAAAGTTGTGGTTAACTACCCCCTGTCACTTTATATTCTCCT
AAGCAGCTCTAACTCATTTCCTGTTTCAATCTTATGACTAGAGCATCTAG
AGTGCTCTTCTGTTCACCTTTCCCTCATATACACTTTACCACTCTACCCT
CTTCACCTCTCTTTCTCTCTTCATGGGTTCTACCAACACAGCCTTCTTGA
AAATCCAAACCTACTATTACAACATTCTTACACAGTTATTCCTAATTTCC
AATGATAACTTCCACTGTTGTACCAACTTCCAAGATACTAACAGCGCTTA
TCATTTTCATAGTTTTTTCATTGGTTATCTTACCTCATTGCATCTCTAAA
GTTCTTCCCCCCTCG
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCTGTTAGCTTATGTCTTTTTGTT
GGAGAATTGAGTATGTTGATATTAAAAACAGATGACTGTTAGTTCCTGTT
ATGTTTGTTGTAGATGACACTATGTGTATGTGATTATCTCATTTTGGTTT
GTTGTGAGATAATTAATATCTTGTTTTTTCTTTGGCACAGGTACCCTCCT
TTAGTTGGAGTTTTCCTTCTAGAATCCTGTTGTTTGAATTTGGTTTTGTC
CTGGAATATTTTGGTTTCTCTATCTATGATGATTGAAAGTTTTGCTGGAT
ATAGTATCCCGGGCTGTCATTTGTGTTCTCTTAGGGTCTGCATGACCTCT
GTCTATATTCTTCTGTCTTTTAAGGCCTCTGTTGAGAAGTTTGGTGTAAT
TCTGGTGGGTCTGCCTTTATATGTTACTTGGTCTTTTTTCCTTAGAGCTT
TTAATAATCTTTCTTTGCTCTGCGTATTTAGAGTTTTTACTACTATGTGA
CCCGATTTATTTCTTTTCTGGTCTCACCTTTTTTTTGTTTTCCCTTCTTT
TTTGTTCCCCATGTCCCTCTTTCTTCCTCATTTGTTTAACCCCTTTTTCC
GCTTTTGCTTACTATCTTTCCTCCCCTCCCGCAATTATTTCCTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_b05.b1 MSMg01no053_b05.b1 CHROMAT_FILE:
MSMg01no053_b05.b1 PHD_FILE: MSMg01no053_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:53 2005
         (406 letters)



>mm_chr15_14139563_14140368
          Length = 806

 Score =  710 bits (367), Expect = 0.0
 Identities = 394/403 (97%), Gaps = 2/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgcagttccgtacaggtccacagaggcagttgaagccatactataaagagaag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattcatgcagttcagtacaggtccacagaggcagttgaagccatactataaagagaag 720

                                                                       
Query: 65  acagaagatcagaacaaattgtcagaattagtttgagaccttgcagagcaattctgtgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acagaagatcagaacaaattgtcagaattagtttgagaccttgcagagcaattctgtgaa 660

                                                                       
Query: 125 aagctgaaagatgctattgattaacatctcaccagaaagaattttgataccaggttttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aagctgaaagatgctattgattaacatctcaccagaaagaattttgataccaggttttgg 600

                                                                       
Query: 185 aattttatttgaccatccatagcttctgggatggtccgtgcatgtacgtgtcctgtattt 244
           ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 599 aattttatttgaccatccatagcttctgggatggtccctgcacgtaggtgtcctgtattt 540

                                                                       
Query: 245 ataattctttgtat-aaaaaacattttaattaccttacaggggagtgattacatatgact 303
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 539 ataattctttgtataaaaaaacattttaattagcttacaggggagtgattacatatgact 480

                                                                       
Query: 304 tcttacatcaaaagttgtggttaactaccccctgtcactttatattctcctaagcagctc 363
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 479 tcttacatcaaaagttgtggttaactaccccctgtcactttatactctcctaagtagctc 420

                                                      
Query: 364 taactcatttcctgtttcaatcttatgactagagcatctagag 406
           |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 419 taactcatttcctgtttcaatcttat-actagagcatctagag 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)