BAC Information

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BAC

Clone NameMSMg01-054D21
Chromosome15 (Build37)
Map Location 30,807,407 - 30,807,776
singlet/doubletsinglet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054D21.T7 (MSMg01no054_d21.b1)MSMg01-054D21.TJ (MSMg01no054_d21.g1)
ACCAG282234AG282235
length661697
length of high quality
(start - end)
608 (13 - 620)620 (78 - 697)
definitionCHROMAT_FILE: MSMg01no054_d21.b1 PHD_FILE: MSMg01no054_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:23 2005CHROMAT_FILE: MSMg01no054_d21.g1 PHD_FILE: MSMg01no054_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTCCGAGAGGATCCGCGGAATTCTGTGCTTCCCCATCTGACCCTGG
GCATATTTTGCTGAGAGAATTGGGATTATTGCTTCTGTGTCACCAGGTGT
TATAGGTCTGCTTGAATTGCATATCTGATCTTTATTTAACTTTTGCAAGT
GGTATCTATTTACATAATTACCCATTTCCTTTAGATTTCAATTCAGTGGA
GTACAGGTTTTTAAAATATGTCTTGTTGTGCCCCCTTTTTTTCATTTCTA
ATTTTAATAACGTTGGATATTCTCTCTGCTCATCTTAGTTCATTTGGGTA
AGGGTCATTGGTTTTCTCAGAGAACCAACAGCTCGTTTCATTGACTCTTT
TTACTGTTTTTCCTCTTTCATTTTATTGATTTCAGCCCCGATTTAGATTT
GTTTTCCTTGCTGTCTACTTCTTTGGGGTGTGATTTCTTTCTTTGTGTTC
TAGAGTTCTCAGTATGCTTCTACTTTGCCAGCATGATATCGCTCCAGTTT
TTTTATATGAGCAACTTAGTGCTATGAACTTGCCTTTATTGTATGGCATA
CGTTTGGAGAGGTTGTATAATTCATTTTCAGTCAAATATTGAAAGTCTTT
CATTTATTTCTTACTTTCTGTCTGAGATTGTAAACTTTCTGTTATTGCTG
ATATATAATTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAGCCAATGCCCATAGAG
TCCCTAAGACCACTGCACTTAATTGCTTTCTACCTATCATAGGGGAAGCA
ATATCTAAATCTGTTTAGAAATTGTGCAACAATTTCTAGCCCCTAGAAAT
AACATATATAACCCCAATTGAATTGTGAGACATGTATAAGGGTTGCCCAT
TGTCAATATGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCA
ATCCCAAACCAGATAGGGGACTAATATTCAATATATATAAACAACTCAAG
AAGATGGACTCCAGAAAATCAAATAACCCTATTAAAAATGGGGTACAGAG
TTAAACAAAGAATTCTCAACTGAGGAATATCGAATGGCTGAGAAGCACCT
GAAAAAGTGTTTAACATCCTTAATCATCAGGGAAATGCAGATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTATGATCAAAAATTCA
GGTGACAGCAGATACTGGTGAGGATGTGGAGAAAGAGGGACACTCCTCCA
TTGTTGGTGGGACGGCAAACTAGTACAACCACTCTGGAAATCAGTCTGGT
GGTTCCTCAGAAAACTGGACATAGTACTACCAGAAGATCCAGCAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_d21.g1 MSMg01no054_d21.g1 CHROMAT_FILE:
MSMg01no054_d21.g1 PHD_FILE: MSMg01no054_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:23 2005
         (620 letters)



>mm_chr15_30807407_30808426
          Length = 1020

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaccagccaatgcccatagagtccctaagaccactgcacttaattgctttctacctat 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 370 aagaccagccaatgcccatagagtccctaagaccactgcacttaatcgttttctacctat 311

                                                                       
Query: 61  cataggggaagcaatatctaaatctgtttagaaattgtgcaacaatttctagcccctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cataggggaagcaatatctaaatctgtttagaaattgtgcaacaatttctagcccctaga 251

                                                                       
Query: 121 aataacatatataaccccaattgaattgtgagacatgtataagggttgcccattgtcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aataacatatataaccccaattgaattgtgagacatgtataagggttgcccattgtcaat 191

                                                                       
Query: 181 atgacaaaaaggccaccaacagattgggaaaggatctttaccaatcccaaaccagatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atgacaaaaaggccaccaacagattgggaaaggatctttaccaatcccaaaccagatagg 131

                                                                       
Query: 241 ggactaatattcaatatatataaacaactcaagaagatggactccagaaaatcaaataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ggactaatattcaatatatataaacaactcaagaagatggactccagaaaatcaaataac 71

                                                                       
Query: 301 cctattaaaaatggggtacagagttaaacaaagaattctcaactgaggaatatcgaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  cctattaaaaatggggtacagagttaaacaaagaattctcaactgaggaatatcgaatgg 11

                     
Query: 361 ctgagaagca 370
           ||||||||||
Sbjct: 10  ctgagaagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)