BAC Information

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BAC

Clone NameMSMg01-054F14
Chromosome15 (Build37)
Map Location 58,386,331 - 58,386,844
singlet/doubletsinglet
Overlap geneEG631797
Upstream geneZhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e
Downstream geneTmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054F14.T7 (MSMg01no054_f14.b1)MSMg01-054F14.TJ (MSMg01no054_f14.g1)
ACCAG282310AG282311
length709710
length of high quality
(start - end)
249 (40 - 288)514 (75 - 588)
definitionCHROMAT_FILE: MSMg01no054_f14.b1 PHD_FILE: MSMg01no054_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:31 2005CHROMAT_FILE: MSMg01no054_f14.g1 PHD_FILE: MSMg01no054_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTCGGAGAGGATCCGCGGAATTCATCAGATACCTTCTAGACATTTT
AAGGGAGGCCTAACTTAAAGAAAATAAATGGCACAGACCACCTCTATACT
TTCTGAGTACGTCATACATGATTTTAACAGTAGCTGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGA
AACATTGCACGCTGTGACCCATTGGTTAGCCCTCAGTGTGTCAGAATCCA
ATGTATGGATTTAGGTCTGACATTGAGCGATATTAGGGTTGTTCAGTAAA
CCAATAGGAAGGGATATTTGCCTTAAAGATGCGATGAAAGACCCCCCTCT
GGGTCAGGTGTGAAGGTCAATATACCTATGATTAACCTGCCTTCTTTTTT
ACCTTTGTAAAAGGTAATTTTTTTACTACCCTATTTTAGTGTACAATTAG
ACCGTTTCCGTATTATTATTGCCCAGATACGATCTCCCTTTTTTTCTTTT
GTTAACGTACCCTGCTCCAACCATTCCCACTCTCCAGATATATCTTCCCT
CCAAACCCTTTCCTGCTTGATTCTGCTCTTTCACCCCCCACCGCAAGGCC
TGGTATGTAATAGGATCGCGCCCCTTCTCCCACTCCCTATGTGGTGATCT
GTTTTGGCGTCCCATTCTGTCGGTCCCTCTCTTCCGCCCTCTTTGGCTCC
CGTTTCCCN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCATTCACACTGACTTTCAATTTG
TGAACTAGCAGTAAGCTGACTTAAACATTAGAGGGAGGGGGTTTCCTTTA
AAATTTCGGGTCTCTCTCCCTAGGAGTTTTTTAAGAACAGCCAGTGTCTG
CTCCCAGAGAAGGAATGAAACACGCAGACAAGCTTTGATCCAATGTCCAA
AGTTCCAGGTGTCCCGCATACAGTCATGGCTCTTGTTGTCGATGTGACTT
AACCTGGTGATGAACTTATCTGCTCTAAGAGCCACTCTCATCAGGTGGCA
GATGGAGTGACAGCACAAAGTTCTGAGAGCTGTCCCAGCTCCCAAAATAT
ATTTTGCATCATGTCATTACGCCTGCAACAGATGCTAAGAATGTTGGATT
CTTGGTGGCTTTTCTTTTCTCAAGAGTCACATTCTTCTAATGCTCCTGGG
AAGGACCGTATCATGATGCCACTGGGACCCAGGCCTTGAGACAGGACTAT
GACATTCAGCTGAGGTTAGAGGTCATATAACATATCCATGCATATGTGAG
AGGGTGAGAAAAACAGGACAGGGAAGGAAATCAGAGTTGCTGTGACTGTT
GAGGGAACCCTTGCCTTATTCCCTGTGGACTTTTACCAACATAAAGTCTT
TGCCCTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_f14.g1 MSMg01no054_f14.g1 CHROMAT_FILE:
MSMg01no054_f14.g1 PHD_FILE: MSMg01no054_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:31 2005
         (514 letters)



>mm_chr15_58386131_58387044
          Length = 914

 Score =  940 bits (486), Expect = 0.0
 Identities = 507/514 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcattcacactgactttcaatttgtgaactagcagtaagctgacttaaacattagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 714 attcattcacactgactttcaatttgtgaactagcagtaagctgaattaaacattagagg 655

                                                                       
Query: 61  gagggggtttcctttaaaatttcgggtctctctccctaggagttttttaagaacagccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gagggggtttcctttaaaatttcgggtctctctccctaggagttttttaagaacagccag 595

                                                                       
Query: 121 tgtctgctcccagagaaggaatgaaacacgcagacaagctttgatccaatgtccaaagtt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 594 tgtctgctcccagagaaggaatgaaacatgcagacaagctttgatccaatgtctaaagtt 535

                                                                       
Query: 181 ccaggtgtcccgcatacagtcatggctcttgttgtcgatgtgacttaacctggtgatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccaggtgtcccgcatacagtcatggctcttgttgtcgatgtgacttaacctggtgatgaa 475

                                                                       
Query: 241 cttatctgctctaagagccactctcatcaggtggcagatggagtgacagcacaaagttct 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cttagctgctctaagagccactctcatcaggtggcagatggagtgacagcacaaagttct 415

                                                                       
Query: 301 gagagctgtcccagctcccaaaatatattttgcatcatgtcattacgcctgcaacagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gagagctgtcccagctcccaaaatatattttgcatcatgtcattacgcctgcaacagatg 355

                                                                       
Query: 361 ctaagaatgttggattcttggtggcttttcttttctcaagagtcacattcttctaatgct 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctaagaatgttgggttcttggtggcttttcttttctcaagagtcacattcttctaatgct 295

                                                                       
Query: 421 cctgggaaggaccgtatcatgatgccactgggacccaggccttgagacaggactatgaca 480
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 294 cctgggaaggactgtatcatgatgccactgggaccctggccttgagacaggactatgaca 235

                                             
Query: 481 ttcagctgaggttagaggtcatataacatatcca 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ttcagctgaggttagaggtcatataacatatcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)