Query= MSMg01no055_d01.b1 MSMg01no055_d01.b1 CHROMAT_FILE:
MSMg01no055_d01.b1 PHD_FILE: MSMg01no055_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:32 2005
(548 letters)
>mm_chr15_102792876_102793826
Length = 951
Score = 957 bits (495), Expect = 0.0
Identities = 535/551 (97%), Gaps = 9/551 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaaggatctccc---aagcggtttgggtagaagtgaatatttgaggctgtatac 60
||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 204 ggaattcaaggat---ccaggaagcgctttgggtagaagttaatatttgaggctgtatac 260
Query: 61 ttgcaattaaatgcaacacggacatgtggatagacctgtatactccacagcctctgggtg 120
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ttgcaattaaatgcaagacggacatgtggatagaccggtatactccacagcctctgggtg 320
Query: 121 caagtgtgtacgatgtctagatgtgagagcgagtccgctggcagccttgcctgccagagt 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 caagtgtgtacgatgtctagatgtgagagcgagtccgctggcagccctgcctgccagagt 380
Query: 181 ggcagcagaatccgaagtagaacagaagcccctttatccgtcctcagcctctcacctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcagcagaatccgaagtagaacagaagcccctttatccgtcctcagcctctcacctctt 440
Query: 241 tacctgcttgaacctttcttccctggacctctgagaattccacattttgcttggagtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctgcttgaacctttcttccctggacctctgagaattccacattttgcttggagtttc 500
Query: 301 cctgctctcaattcaagtggtacagggcttggtgctctagaagaaaagagaattgttcct 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgctctcaattcaagtgggacagggcttggtgctctagaagaaaagagaattgttcct 560
Query: 361 tcaagatttgagaaaagaacgagtaatctcggcatccagaacaaggagaaaaatcccaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagatttgagaaaagaacgagtaatctcggcatccagaacaaggagaaaaatcccaag 620
Query: 421 agtcagtgatgtaattttgctttccattttt-gcttgaagaggtttcagtgtgcatattt 479
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 621 agtcagtgatgtaattttgctttccattttttgcttgaagaggtttcagcgtgcatattt 680
Query: 480 taaaattgcatttaattatttttattccacaaggagagacactcttcctct-t-tctctt 537
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 681 taaaattgcatttaattatttttattccacaaggagagacactcttcctctctctctctt 740
Query: 538 catcttcagat 548
|||||||||||
Sbjct: 741 catcttcagat 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 951
Length adjustment: 10
Effective length of query: 538
Effective length of database: 941
Effective search space: 506258
Effective search space used: 506258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_d01.g1 MSMg01no055_d01.g1 CHROMAT_FILE:
MSMg01no055_d01.g1 PHD_FILE: MSMg01no055_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:32 2005
(467 letters)
>mm_chr15_102914049_102914917
Length = 869
Score = 837 bits (433), Expect = 0.0
Identities = 460/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Minus
Query: 1 cctgtcttgactcagtaacagagttacagctgtgatgaagaagacaggacttctgccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cctgtcttgactcagtaacagagttacagctgtgatgaagaagacaggacttctgccctg 610
Query: 61 tgcctattgagcatcgtaaaagaagacacaaatatgtctgtgagggtaaagggacacttg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgcctattgagcatcgtagaagaagacacaaatatgtctgtgagggtaaagggacacttg 550
Query: 121 ccattggcaggacatatggggcacctatcctagactagaagggcttcacaatgacacagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ccattggcaggacatatggggcacctatcctagactagaagggcttcacaatgacacagg 490
Query: 181 aaaggcatctctcagtcttcccccaaaggatatgaacactatctaccatgtgtcagggaa 240
|||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct: 489 gaaggcatctctcagtcttccaccaaaggatatggacactatctaccatgtgccagggaa 430
Query: 241 aaggctac-actggcctagagtttgagt-cctgattagtgcccagccagcagtttgtggc 298
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 429 aaggctactactggcctagagtttgagtgcctgattagtgcccagccagcagtttgtggc 370
Query: 299 cagccaaacctaggcaggcttcttgtttctagtcacagggcgtccaagactacactaatg 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 369 cagccaaacctaggcaggcttcttgtttctagtcacagggtgtccaagactacactaatg 310
Query: 359 ctgtccttcccactccagcagggaagctccatcatgttcaaccagtctggatggctttat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctgtccttcccactccagcagggaagctccatcatgttcaaccagtctggatggctttat 250
Query: 419 cagttctctgtcttgctcacacccagcctcagggctgggctatctgaaa 467
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 249 cagttctctgtcttgctcacacccagcctcagggttgggctatctgaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 869
Length adjustment: 10
Effective length of query: 457
Effective length of database: 859
Effective search space: 392563
Effective search space used: 392563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
