ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCATTACCCTGTAATCGCTAGTGTTTGAAATGATGGAGAAAAGAAAA
AGGGTGTCTTAGGGTAACAACACATGATGTGAACAATAGGCATTATTGTT
TTGGGGGAAGTAGAGGTTCAAAAGTTTTAATATATTTAATTATTAATTAA
TAATCTATCAGTGTGCTATATAAATGATTGAAGTAAGAAGCAAATAGCTT
CACCGAGGATGAGTGGATAGTCCAAGATAGCACAGTTAGAAAGAGGTGGA
CACAAATTAAAGATAGTCTAAACCCTAGACTTTTCAAAACTTCTGTGGCC
TGTCAAATTTTGTTGGCGGCTTTCACAAAACATTTCACTAAAAAATATTG
TCTACCATTTTAAGTAAGCTCTCAGGAATCATAGGCCAAAGAATAATTTT
GTCTGTACTTCAAATCCTGATTTGCTTGGAGCTCATGGGTAAGAGACTCC
AAGTGTCTTGTTGATTCCGGATCTGGCTCTCAGCACAGTGCAGAAACTGG
CCAGCAGTGTTGAAGGACTGAAATAGAGGCTTGGCTACAGGACGTGATGC
AGTTTGTCAGCTTCTTGGTCTGTTTTCTCCCTTTCCCATCTTCGACTCTT
CACACTCAGGGTAGAAGGACAGGGAAGCCCATTGCTGAAGCTCTACTTCT
CT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGACCACCTGCAGGAGATAG
GCAGGGCCTCAAGTGGAAGAATGGGATTACCAACCTACAGTCAAATTTTC
TGACTCAGAATTATTCTTATCTAAAGAATAGTAGGGAACAAAGTGGAGAA
GAGACTGAGGGAAAGGCAATCCTGTGGCCAGCCCAACTTTGGAACTATCT
CATGGGGGCGTACCAAGGCTTGACAGTATTATTGATGCTATGGTATGTTT
ATAGACAGGAACCTAGCATGGCTATCCTCTGAGAGGCCCAACCAGCAGCT
GACTGAGACAGACACAGATTCTTATACCCAACCACTAGACTGAAATCATG
GACCACTATGGTTGAATTAGGGGAAGGATGGAAGAAGCTGAGGGGAGGGT
GACCCCATTGGAAGACCTGCAGTCTCAACTAATCCAGACCCCTGGGAACT
CCCAGACACTGAGCCACCAACTAGGTAGTATACAGGGAGCTTGTCAGAGG
ACCCAGACACATATATAACAGAGGACTGCCTCATCTGACCTCACTGGGAG
AAGACATGCTTAATCCTGGAGAGACATGAGGTCCCAGGGAGGGAAAGGCC
TGGGGAGGGGAAAGTCCTCTGGGATACAGGGGGCAGCAGCAATGGGATGA
GGAACTTGGGAAGGGGCAACGGCTGAACTTTACAAA

Query= MSMg01no055_j16.b1 MSMg01no055_j16.b1 CHROMAT_FILE:
MSMg01no055_j16.b1 PHD_FILE: MSMg01no055_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:02 2005
         (583 letters)



>mm_chr15_54127193_54128175
          Length = 983

 Score = 1081 bits (559), Expect = 0.0
 Identities = 577/583 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaatcgctagtgtttgaaatgatggagaaaagaaaaagggtgtcttagggtaacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaatcgctagtgtttgaaatgatggagaaaagaaaaagggtgtcttagggtaacaaca 260

                                                                       
Query: 61  catgatgtgaacaataggcattattgttttgggggaagtagaggttcaaaagttttaata 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatgtggacaataggcattattgttttgggggaagtagaggttcaaaagttttaata 320

                                                                       
Query: 121 tatttaattattaattaataatctatcagtgtgctatataaatgattgaagtaagaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttaattattaattaataatctatcagtgtgctatataaatgattgaagtaagaagca 380

                                                                       
Query: 181 aatagcttcaccgaggatgagtggatagtccaagatagcacagttagaaagaggtggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagcttcaccgaggatgagtggatagtccaagatagcacagttagaaagaggtggaca 440

                                                                       
Query: 241 caaattaaagatagtctaaaccctagacttttcaaaacttctgtggcctgtcaaattttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaattaaagatagtctaaaccctagacttttcaaaacttctgtggcctgtcaaattttg 500

                                                                       
Query: 301 ttggcggctttcacaaaacatttcactaaaaaatattgtctaccattttaagtaagctct 360
            ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggtggttttcacaaaacatttcactaaaaaatattgtctaccattttaagtaagctct 560

                                                                       
Query: 361 caggaatcataggccaaagaataattttgtctgtacttcaaatcctgatttgcttggagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaatcataggccaaagaataattttgtctgtacttcaaatcctgatttgcttggagc 620

                                                                       
Query: 421 tcatgggtaagagactccaagtgtcttgttgattccggatctggctctcagcacagtgca 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatgggtaagagactacaagtgtcttgttgattccggatctggctctcagcacagtgca 680

                                                                       
Query: 481 gaaactggccagcagtgttgaaggactgaaatagaggcttggctacaggacgtgatgcag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 gaaactggccagcagtgttgaaggactgaaatagaggcttggctacaggatgtgatgcag 740

                                                      
Query: 541 tttgtcagcttcttggtctgttttctccctttcccatcttcga 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgtcagcttcttggtctgttttctccctttcccatcttcga 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)