BAC Information

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BAC

Clone NameMSMg01-056A08
Chromosome15 (Build37)
Map Location 82,478,270 - 82,478,391
singlet/doubletsinglet
Overlap genenone
Upstream geneEp300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13
Downstream geneLOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056A08.T7 (MSMg01no056_a08.b1)MSMg01-056A08.TJ (MSMg01no056_a08.g1)
ACCAG283533AG283534
length699720
length of high quality
(start - end)
286 (59 - 344)151 (75 - 225)
definitionCHROMAT_FILE: MSMg01no056_a08.b1 PHD_FILE: MSMg01no056_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:34 2005CHROMAT_FILE: MSMg01no056_a08.g1 PHD_FILE: MSMg01no056_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACCAT
ACCCTCAAAGAAGATTTAATTCCAGTTCTGCACAAACTATTCCACAAAAT
AGAAGTAGACCCAACTCTACCCAAATCATTTTATGAAGCCACAATTACTC
TGATACCTAAACCACAAAAAGATCCAAGAAAGATAGAGAATTTCAGACCA
ATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTCCCTAA
CCGAATCCAAGAACACATTAAAGGAATCATCCATCCTGACCAAGTAGGTT
TTATTCCAGGGATGCAGGGATGGTTTAATATATGGAAATCCAGCAATGTA
ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTTGTT
AGATGTGGAAAAAGCATTGGACAAGATCCAACACCCATTCATGACAAAAG
TCTTGGAAAGATCAGGAATTCCAGGCCCCTACCTAACCCTGATACAAGCA
ATCTACAGTAAACCTGTAGTCCACATCAAAGTAAAATGGTGAGAAGCTGG
TAACAATCCCACTAATACCAGGGACTAGACTAGGCTGCTCACTCCTCTCC
ATACCTATTCAACATTGTTCTTGAAGTCCTAGCCATGATACTTCGATTAC
AAAAGGAGACCAAAGTTATTCAAATTGTATTACAAGATGTTCTAATATC
CACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTACCAGAGAAAATTCATGGGGAGAACCAGATACAGA
GATAGCCACACGAATGAAGGAATGCCCCTAGCAGACCACAGAACTCCCAG
GTATCCATGGTTATGTCCATAATGCAAGTGTGCATGTGTCATTGTGTCTT
ACACGCGTTCGAGCGACCGGCCATGAAAGACGCAACAAACCTGAATCTTC
TGCAGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGAGCAAGAGCT
AGAAAGCAAGAGCAAGAAAAAGAACTTTATCTAGAAAGCAAGATAAGAGA
GAAAAAAAACAAGATTTTTAAAGCCCGACGTATAAAAAGAACAAGAACAA
GAAAGCAAGATAAAGAAAGCAACAGAGAGAGAAAGAACAGCAAAACCCCG
TCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATT
GGCTGCAGCCCATCAGCCCAGTTGTCATCACGATAAAGGCACAACACTTG
GTATGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACTACTTAAAAC
ACAGCTGTCAGCGCCCTCTTATAATGGTAAATGTGAGGGCGGCTCCCAAC
AATTGTGACTTTTTGTGTATGCCTCCCCCCCGGCAGTGTAAATATTTACA
TTTGTGCCCTTTGTTGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_a08.g1 MSMg01no056_a08.g1 CHROMAT_FILE:
MSMg01no056_a08.g1 PHD_FILE: MSMg01no056_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:34 2005
         (151 letters)



>mm_chr15_82478070_82478620
          Length = 551

 Score =  205 bits (106), Expect = 1e-57
 Identities = 118/126 (93%), Gaps = 8/126 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcatggggagaaccagatacagagatagccacacgaatgaaggaatg----ccccta 56
           ||||||||||||||||||||||||||||||||||||||||||||||||||        ||
Sbjct: 322 aattcatggggagaaccagatacagagatagccacacgaatgaaggaatgtgga----ta 267

                                                                       
Query: 57  gcagaccacagaactcccaggtatccatggttatgtccataatgcaagtgtgcatgtgtc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcagaccacagaactcccaggtatccatggttatgtccataatgcaagtgtgcatgtgtc 207

                 
Query: 117 attgtg 122
           ||||||
Sbjct: 206 attgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)