BAC Information

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BAC

Clone NameMSMg01-056F11
Chromosome15 (Build37)
Map Location 100,849,727 - 100,997,814
singlet/doubletdoublet
Overlap geneScn8a, EG668225, Ankrd33, Acvrl1
Upstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
Downstream geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056F11.T7 (MSMg01no056_f11.b1)MSMg01-056F11.TJ (MSMg01no056_f11.g1)
ACCAG283774AG283775
length702702
length of high quality
(start - end)
285 (73 - 357)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no056_f11.b1 PHD_FILE: MSMg01no056_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:58 2005CHROMAT_FILE: MSMg01no056_f11.g1 PHD_FILE: MSMg01no056_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,849,727 - 100,850,011)(100,997,530 - 100,997,814)
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCG
GAATTCATCCGTTGACCAGAATGAAGGACCTAGAGGCTGGAGACGGGGTG
GGCGTGTTTTGAAGAGGCTTCCCGGGCTGTGTGGTGATTTGTTTCATAAA
CACATTCCCTTCCCAAGTTCTCTTCGACCTCTGTGGTTAGTGAGTGCTTC
CAGGAGCTGACACTGTCTCATCCTCTCCTGTTTCAGGAAGCTGGGTGTGT
TCGTCAGGGTTGTCTAGATTAACAGAATTTATAGAGTGAATATAGACAAA
CAGACAGACAGGATTTATTTTATTGACTTACAGGCTGTGGTCCAGCTAGT
CCAGCAATATTTGTTTATACCCCCCCCCCCCCAAGAATCCACTCATTGTC
CAACCCACAAGGCTGGACATCTCATCTGAACTTCAGTGTCCCCCAGAATC
CCAAAGAACCAGCCTCTGATGCCAGGGAAGGAATCGACTTGCTATAGAAC
AAGGAATCCAAGAGCACGTCTTCCTTCTTCCATGTCCTTATCTAGGCTCC
CAGCACCTGGCCTACATTAGAGGACCGCCTTCCCCCCTCATTTTAACCGT
ATTGAAAGTGCGCCTTGGTGTGCCTCACCACTTTAATGATCCGGTTTTCA
ATCGCTCCCTTCCCCTCTTATTATCTCAATTCTTTTCCGCGTGTCCTTCT
GT
TCATTGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAAATGCAAGCCAGCTCCATGGTATG
TTTTAATGTAAAAATTTCCCTCTCTAGACAGTTTAGGAGATCACTCGCTA
TTTAGATTCAAGTAACCTCGGCCACGCGTGGTATTATAGAAAAGAAAGTA
AGAAATCATCATGAGAGGTGTCACCCCATGACTACAGGAGATTCTTTAGT
TAGCGTTCCAATAAATATGCAGCCAAAAAAGACACAACCAGATAGAACTT
AAAGGAAAGTAAATCAACTTATAACTGTCTATTCATACAAAATGTCTCTT
TAAAAGGATTCTTTACTGAACCACCACCTCCTTGCGGACTTCATGCACGC
CTTACAGAGTCTCAGATCCACTCGTAGAAAAGGATTGTACAACTTCCAGG
TTAAGAGAAGAGGAAACAGGATGGAAAAGTACAAGGAAGTAAACTCGTAT
ACGATAACAACACTAGTAATAACGCATAAATACAACATAATGAGTAGAAT
AAAAATTCAGATATGTGCACGATTATAATATATGTTAGTGAACCACATAA
TCCAACTTAAAAATAGCGACTAAATATGAGGGGAGAAAAGGATTTCCGAT
ACTCCAGGTGAAACGAATGAACTTATTTTGTTCTGTTGCTTGATCCATCG
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_f11.b1 MSMg01no056_f11.b1 CHROMAT_FILE:
MSMg01no056_f11.b1 PHD_FILE: MSMg01no056_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:58 2005
         (285 letters)



>mm_chr15_100849527_100850211
          Length = 685

 Score =  489 bits (253), Expect = e-143
 Identities = 277/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggacctagaggctggagacggggtgggcgtgttttgaagaggcttcccgggctgtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 gaaggacctagaggctggagacggggtgggcgtgttttgaagaggcttcgtgggctgtgt 260

                                                                       
Query: 61  ggtgatttgtttcataaacacattcccttcccaagttctcttcgacctctgtggttagtg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ggtgatttgtttcataaacacattcccttcccaagttctcttcaacctctgtggttagtg 320

                                                                       
Query: 121 agtgcttccaggagctgacactgtctcatcctctcctgtttcaggaagctgggtgtgttc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgcttccaggagctgacattgtctcatcctctcctgtttcaggaagctgggtgtgttc 380

                                                                       
Query: 181 gtcagggttgtctagattaacagaatttatagagtgaatatagacaaacagacagacagg 240
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 381 gtcagggttgtctagattaacagaacttatagagtgaatatagacagacagacagacagg 440

                                                        
Query: 241 atttattttattgacttacaggctgtggtccagctagtccagcaa 285
           |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 atttatttgaatgacttacaggctgtggtccagctagtccagcaa 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no056_f11.g1 MSMg01no056_f11.g1 CHROMAT_FILE:
MSMg01no056_f11.g1 PHD_FILE: MSMg01no056_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:58 2005
         (285 letters)



>mm_chr15_100997330_100998014
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatgcaagccagctccatggtatgttttaatgtaaaaatttccctctctagacagtt 60
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 485 ataaatgcaagccagctccatggtatgttttaatgtaaaattttccctatctagacagtt 426

                                                                       
Query: 61  taggagatcactcgctatttagattcaagtaacctcggccacgcgtggtattatagaaaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgggagatcactcgctatttagattcaagtaacctcggccacgcgtggtattatagaaaa 366

                                                                       
Query: 121 gaaagtaagaaatcatcatgagaggtgtcaccccatgactacaggagattctttagttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaaagtaagaaatcatcatgagaggtgtcaccccatgactacaggagattctttagttag 306

                                                                       
Query: 181 cgttccaataaatatgcagccaaaaaagacacaaccagatagaacttaaaggaaagtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cgttccaataaatatgcagccaaaaaagacacaaccagatagaacttaaaggaaagtaaa 246

                                                        
Query: 241 tcaacttataactgtctattcatacaaaatgtctctttaaaagga 285
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcaacttagaactgtctattcatacaaaatgtctctttaaaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)