BAC Information

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BAC

Clone NameMSMg01-056F22
Chromosome15 (Build37)
Map Location 52,224,507 - 52,224,890
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
Downstream geneLOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056F22.T7 (MSMg01no056_f22.b1)MSMg01-056F22.TJ (MSMg01no056_f22.g1)
ACCAG283796AG283797
length723742
length of high quality
(start - end)		677 (47 - 723)316 (77 - 392)
definitionCHROMAT_FILE: MSMg01no056_f22.b1 PHD_FILE: MSMg01no056_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:01 2005CHROMAT_FILE: MSMg01no056_f22.g1 PHD_FILE: MSMg01no056_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGCTTATCTCCTCTGTGAAAGTCTTAAGCTTAGTGGCAGTTGT
CAGGGAGCACAGAGGGGCCTTCTATGGGAGACTTAGGCAGACAGGCTCTA
TAGACAAGGCCTTCTCTATGCTCCCCACAGTGGTTCTTGATGAAAGAGAC
AGTCCTTGGTTTCAAACTGTTGATTGTTCATCGTCGAAAATGGGTGCATA
TCACCTCCTCAGGGTGGACTAGAGATTAAATCCCTTTTGCAGGGTGGAAT
ATCAGAACTGGGAAGCTTATTGGCTAAATCCTCAGGGTTTGCAGATACCT
TCTTAGCATGGAGAACTCTGTTTTGGGTTATGTGGTCCTGTTTCCTATAT
AGGAAGTGTGGCACAAGTTCCTAGGCCAGGAATCTGCTTAGGAGCATGGA
GCCACCTACTGTCTCAGGTGGGTGCCTGAAAGCTGGGGACTCTAAACCTG
CTCAACCTTACCAAGTTTCGTGGCATGGTCCATTGTCCCACAGCTATAAG
TAAGTAAGGTCATATTTCATTACCAATAAAGAAAGAGATAAAGTGTGAAG
AGATGGAGTAGGGAAGAATGGTGGTACTCAGCTAGCTTTTCCTTTTTATT
TAGTTCAGGAACCCAGCCTATGAAATGCGATCACTCACATTCAAGGAGAC
TCCTTTCTGGCTAAACTTTCCTG

NTTCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACGGCTCATAGAAACTGAAAT
GCTAACCAGAGAGCCTACATGCGAGGCTCTCTGCACATATGCTACAGTTG
TGTAGCTTGGTCTTCTTGTGAGACTCCTAACAGTGGTGGGAGTAGGGGCT
GCCTCTGATTGTTTTGCTGGATTTTGAGACCCTCTTCCTCATGCTGGGTT
GCCTCCTTTAGCCTTAATAGGAGAAGAGGTGCCTAGTTTTACTACAACTT
CATATACCATGTTTGGTTAATATCCATGGGAGCCTACCCTTGTCTGAAGA
GAAAATGAGAAGGAGTGGATTTGGGGGGGGTATGTAGAGGGAATTCTTTT
TTTTTATTTTCCTCTTCTCCTCTTTCATTCCTTTTTTTTTTCTATTTTTC
TTACACTTTTTAGATTTATCATCGTTCTTCCATTATATTATTATTATATA
TGAAGTAATACTTATAAATTACTTCTATATATTTCTTATAATTTAAAACA
ATAATATTTTTATTTTAATATATTTTATATATATATAATCTATTCTAGTA
TAATCTTTTCTTTTTCTCCGTATTTCAAATATCATATTTTTTAATCTTAT
TATTATTATTCACCTTAATCATTGGATTTACATACTACACCCTTTATATT
TATCATGGCCTTTCGCCGTAGACACTTTCAGACTCCTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_f22.b1 MSMg01no056_f22.b1 CHROMAT_FILE:
MSMg01no056_f22.b1 PHD_FILE: MSMg01no056_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:01 2005
         (677 letters)



>mm_chr15_52223811_52224890
          Length = 1080

 Score =  683 bits (353), Expect = 0.0
 Identities = 376/385 (97%), Gaps = 5/385 (1%)
 Strand = Plus / Minus

                                                                        
Query: 297  agataccttcttagcatggagaactctgttttgggttatgtggtcctgtttcctatatag 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 agataccttcttagcatggagaactctgttttgggttatgtggtcctgtttcctatatag 1021

                                                                        
Query: 357  gaagtgtggcacaagttcctaggccaggaatctgcttaggagcatggagccacctactgt 416
            ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 1020 gaagtgtggcacaagttcccaggccaggaatctgctaaggagcatggagccacctactgt 961

                                                                        
Query: 417  ctcaggtgggtgcctgaaagctggggactctaaacctgctcaaccttaccaagtttcgtg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  ctcaggtgggtgcctgaaagctggggactctaaacctgctcaaccttaccaagtttcgtg 901

                                                                        
Query: 477  gcatggtccattgtcccacagctataagtaagtaaggtcatatttcattaccaataaaga 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  gcatggtccattgtcccacagctataagtaagtaaggtcatatttcattaccaataaaga 841

                                                                        
Query: 537  aagagataaagtgtgaagagatggagtagggaagaatggtggtactcagctagcttttcc 596
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  aagagataaagtgtggagagatggagtagggaagaatggtggtactcagctagcttttcc 781

                                                                        
Query: 597  tttttatttagttcaggaacccagcctatgaaatgcg-atcactcacattcaaggagact 655
            ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct: 780  tttttatttagttcaggaacccagcctatgaaatg-gtatcactcacattcaaggggact 722

                                     
Query: 656  cctt---tctggctaaactttcctg 677
            ||||   ||||||||||||||||||
Sbjct: 721  ccttctttctggctaaactttcctg 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1080
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1070
Effective search space:   713690
Effective search space used:   713690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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