BAC Information

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BAC

Clone NameMSMg01-059A15
Chromosome15 (Build37)
Map Location 96,642,751 - 96,643,398
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem16f, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941
Downstream geneLOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059A15.T7 (MSMg01no059_a15.b1)MSMg01-059A15.TJ (MSMg01no059_a15.g1)
ACCAG285812AG285813
length702704
length of high quality
(start - end)
650 (53 - 702)401 (82 - 482)
definitionCHROMAT_FILE: MSMg01no059_a15.b1 PHD_FILE: MSMg01no059_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:26 2005CHROMAT_FILE: MSMg01no059_a15.g1 PHD_FILE: MSMg01no059_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAT
GCGCGGAATTCAATTATGTTCACCTTTTGAATTAAAAAACACACAGTGTT
CCTGATAGCTCTGTTTTTCAAAACATGAGAATTTCTTGCTTTGTACTTGT
TGGGCACCTGCAAATAACGTTCCTTCTATATAGGATTTCTTTTGTTCCCA
TCCTCTTCCACTTTCATATTGCATCCTTAGTATACAGTATATCTCCACCC
ATGACCTTTGCCACTGGCTGACATATGCTTGTCCCTTCCAGTAGCCTTGT
GGGTGCTCTCAACTTTCCCCATCATACCACCCACTATAGTACACTGTAAT
GTGAAGTGGAAACTTAAGGGTTCTTTGGAAAGTCAGCTGTGTAAGATGTT
GTTTTGCTGGGGCAAACACATGAAGTTCCCAAAGAAACACGGATAAAAGG
ATGTTTTTACAAAGGTAGACTCATGAAGGAATGTTTCACTGAAGCAGACA
CAGGTGAAAGGATGTTCTGCTAAAGCAAGCACAAGAAAGGACACGTGATG
AAGGATTCCTGGCTAACGACACACATGTATTGGTCTGCCTTATATTGCAT
AGTTGAGCTCAATTTGTCAGGATTCCGTAGAAAGAAATGCAACAGAAAAC
TTCTGGTAGTGTGCTGTAACTTCTTACCACTTCTGCAGACTCTGGATGAT
TG
CAANGGAACCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATTTATTTTTTTTTATT
TATTTTGTGTTTGGTTGGGTGTTTTGTTTTGTTTTGTTTTTATGTATATG
AGTACACGGTAGCTGTACAGATGGTTGTGAGTTATCATGTGCTTGCTGGG
AATTGAATTCAGGATCTCTGCTCGCTCCAGCCATGCTCTCTCTGGCCCAA
AGATTTATTTACTATATATGTAAGAACACTGTAGCTCTCTTTAGATATGC
CAGAAGAAGGTGTCACAGTTCTTTTTCTCTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTTTTCCCCCCCTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGTCCTTTCTTTCCTTCT
TCCTTTTTTTTTCAAGACAGGATCTCTCTGCGCAGTCCTGACTGTACTGC
AACACACTCTGTAGACCACATCTGGTCTTGAACTAAAAAACCGGCCTGAC
TCTGCCTCACCAGTGATAAAATTAAAGGAGTGGGAACGCCCCCGCACCTA
CTGTCTGCCAGCTGGCACACGTGCTCTAAACCCCCCCCCCCACACCCACG
AATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_a15.b1 MSMg01no059_a15.b1 CHROMAT_FILE:
MSMg01no059_a15.b1 PHD_FILE: MSMg01no059_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:26 2005
         (650 letters)



>mm_chr15_96642549_96643598
          Length = 1050

 Score = 1178 bits (609), Expect = 0.0
 Identities = 639/649 (98%), Gaps = 2/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcaattatgttcacc-ttttgaattaaaaaacacacagtgttcctgatagctctg 61
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaattatgt-cacccttttgaattaaaaaacacacagtgttcctgatagctctg 261

                                                                       
Query: 62  tttttcaaaacatgagaatttcttgctttgtacttgttgggcacctgcaaataacgttcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttttcaaaacatgagaatttcttgctttgtacttgttgggcacctgcaaataacgttcc 321

                                                                       
Query: 122 ttctatataggatttcttttgttcccatcctcttccactttcatattgcatccttagtat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttctatataggatttcttttgttcccatcctcttccactttcatattgcatccttagtat 381

                                                                       
Query: 182 acagtatatctccacccatgacctttgccactggctgacatatgcttgtcccttccagta 241
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 acagtatatctccacccatgacctttgccaccggctgacatatgcttgtcccttccagta 441

                                                                       
Query: 242 gccttgtgggtgctctcaactttccccatcataccacccactatagtacactgtaatgtg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gccttgtgggtgctctcaactttccccatcataccacccactatagtacactgtaatgtg 501

                                                                       
Query: 302 aagtggaaacttaagggttctttggaaagtcagctgtgtaagatgttgttttgctggggc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagtggaaacttaagggttctttggaaagtcagctgtgtaagatgttgttttgctggggc 561

                                                                       
Query: 362 aaacacatgaagttcccaaagaaacacggataaaaggatgtttttacaaaggtagactca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaacacatgaagttcccaaagaaacacggataaaaggatgtttttacaaaggtagactca 621

                                                                       
Query: 422 tgaaggaatgtttcactgaagcagacacaggtgaaaggatgttctgctaaagcaagcaca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 622 tgaaggaatgtttcactgaagcagacacaggtgaaaggatgttctgctaaagcaagcgca 681

                                                                       
Query: 482 agaaaggacacgtgatgaaggattcctggctaacgacacacatgtattggtctgccttat 541
            |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 682 tgaaaggacacgtgacgaaggattcctggataacaacacacatgtattggtctgccttat 741

                                                                       
Query: 542 attgcatagttgagctcaatttgtcaggattccgtagaaagaaatgcaacagaaaacttc 601
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 742 attgcatagttgagctcaatttgtcgggattccgtagaaagaaatgcaacagaaaacttc 801

                                                            
Query: 602 tggtagtgtgctgtaacttcttaccacttctgcagactctggatgattg 650
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 802 tggtagtgtgctgtagcttcttaccacttctgcagactctggatgattg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)