BAC Information

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BAC

Clone NameMSMg01-060A11
Chromosome15 (Build37)
Map Location 103,458,275 - 103,458,931
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060A11.T7 (MSMg01no060_a11.b1)MSMg01-060A11.TJ (MSMg01no060_a11.g1)
ACCAG286569AG286570
length706703
length of high quality
(start - end)
663 (42 - 704)571 (75 - 645)
definitionCHROMAT_FILE: MSMg01no060_a11.b1 PHD_FILE: MSMg01no060_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:40 2005CHROMAT_FILE: MSMg01no060_a11.g1 PHD_FILE: MSMg01no060_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGATCCGCGGA
ATTCAATATGCCCATTTCTCCAATCCCTCTGGTCAAAAGGTACAGGGCTC
AAAATAAACACAGTAGTCCATGATATATGATATCAAGATGTAAAAAACAG
ATTTGTCACACACAAACAAGGAACTTCTCAACCAAATATTCATTATCATG
CTTGACATTCTTGAAAACAAAACGTTTACAGAAAAAAGAGCATGTATTGC
TAAAAAAATATCTATGGAAATTTCTCTTTGATAATGACTTTTGCAACATT
TTAGGTAAAGCTGTAAGCCAAAAGCCTAGAATTACCAACCAAGCAGCATA
CACGAACTGGTTTGAGGCCCCCTGACACACATACAGCAGAGGACTGCCTA
GTCTGACCTAAACGCCACAAGATAGGAGACTTGAGGCACCAGGGAGTGGG
GAGGCCTGCAGGAAGGGTGGACAGCCTCTTGGAGCGGGGAGAAGTGGGAT
GAGGAACTGTGGGAGGGGGTAAAAACTGGACTGTAAATAAATAAAAGTTT
TTTTAAAAAAACCTAGAAATAGTGTAAAGTCCTGTTTTCAACTTTAATCT
CTCATTTTATATTCCCCACAACTGGCTCTTTGATTGTTTCCAAATATCAT
CTTATAATGTGCTATACCCCAGGGTTGGAAAGCTGAGAAATGTATTATGA
AGTATT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTGCTGTCTCCTAAGAATCAAAGA
TCTAGGGTCATGGAATGCTGATTCAAAGGTAATCAAAAGGGAACCTGGAA
TCAAAACTGAATTGATATGTAAATAAAAACCTGGGCTTTTGGTCTGCATG
AGATGAACTAGCAAAAAGCAATAGCAGTCAGAAAATCCATAAACAATGAA
CACAGTCTTTTGAAATTTTTCATAGCTCATTTAGATTTTTTTCTAATAGG
ATTTCTGACCTTGATTGGAAATCCCAAGAATTACTTAGCGAGTGAAAGCT
GTTCTTTTAGAATGTTTTCTAACAGCTACTCAGAGAGAGAACTGCTTTGA
AATCTAACACCAGCTCTTGTAGAAATTTTTTCTGGCTTTTTGATTTTAAT
TGGAAAAATCCAAGAATTACTTCTAGAATTTTTCTGACAGGATTTCTGAC
TTAGTCAGATGATCCAAGAATTTTTTATAGCAGTTTTTCCAACTTTGGTA
GGAAAACTCATGAGCTATCCAGGGAGCTTTTAGAATTTTTACAATCATAA
AGCTAGCTGTCTCAGCCATAGAGTTGCTTACAATAGCAAGAATAAGTTGT
TTGGCTTAGAGCAGAGCAGAGAAAGACAGAGAGAGACAAAGAGGAGTGGA
GGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_a11.b1 MSMg01no060_a11.b1 CHROMAT_FILE:
MSMg01no060_a11.b1 PHD_FILE: MSMg01no060_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:40 2005
         (663 letters)



>mm_chr15_103458069_103459131
          Length = 1063

 Score = 1170 bits (605), Expect = 0.0
 Identities = 644/657 (98%), Gaps = 1/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaatatgcccatttctccaatccctctggtcaaaaggtacagggctcaaaataaa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaatatgcccatttctccaatccctctggtcaaaaggtacagggctcaaaataaa 266

                                                                       
Query: 68  cacagtagtccatgatatatgatatcaagatgtaaaaaa-cagatttgtcacacacaaac 126
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 267 cacagtagtccatgatatatgatatcaagatgtaaaaaaacagatttgtcacacacaaac 326

                                                                       
Query: 127 aaggaacttctcaaccaaatattcattatcatgcttgacattcttgaaaacaaaacgttt 186
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 aaggaacttctcaactaaatattcattattatgcttgacattcttgaaaacaaaacgttt 386

                                                                       
Query: 187 acagaaaaaagagcatgtattgctaaaaaaatatctatggaaatttctctttgataatga 246
           || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 387 acggaaaaaagagcatgtattgctacaaaaatatctatggaaatttctctttgataatga 446

                                                                       
Query: 247 cttttgcaacattttaggtaaagctgtaagccaaaagcctagaattaccaaccaagcagc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttttgcaacattttaggtaaagctgtaagccaaaagcctagaattaccaaccaagcagc 506

                                                                       
Query: 307 atacacgaactggtttgaggccccctgacacacatacagcagaggactgcctagtctgac 366
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 507 atacacgaactggtttcaggccccctgacacacatacagcagaggactacctagtctgac 566

                                                                       
Query: 367 ctaaacgccacaagataggagacttgaggcaccagggagtggggaggcctgcaggaaggg 426
           ||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 567 ctaaatggcagaagataggagacttgaggcaccagggagtggggaggcctgcagggaggg 626

                                                                       
Query: 427 tggacagcctcttggagcggggagaagtgggatgaggaactgtgggagggggtaaaaact 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tggacagcctcttggagcggggagaagtgggatgaggaactgtgggagggggtaaaaact 686

                                                                       
Query: 487 ggactgtaaataaataaaagtttttttaaaaaaacctagaaatagtgtaaagtcctgttt 546
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 687 ggactgtaaataaataaaagttttttttaaaaaacctagaaatagtgtaaagtcctgttt 746

                                                                       
Query: 547 tcaactttaatctctcattttatattccccacaactggctctttgattgtttccaaatat 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcaactttaatctctcattttatattccccacaactggctctttgattgtttccaaatat 806

                                                                    
Query: 607 catcttataatgtgctataccccagggttggaaagctgagaaatgtattatgaagta 663
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 807 catcttataatgtgctataccccagggttggaaagctgagaaatgtactatgaagta 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)