Query= MSMg01no060_n22.b1 MSMg01no060_n22.b1 CHROMAT_FILE:
MSMg01no060_n22.b1 PHD_FILE: MSMg01no060_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:42 2005
(587 letters)
>mm_chr15_17249471_17250458
Length = 988
Score = 1013 bits (524), Expect = 0.0
Identities = 572/588 (97%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 1 aactatgcagtgtaaacagaaccataatcattctgccagcactttaatgtggaacctccc 60
||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct: 201 aactatgcagtataaacagaaccataatcattctgctagcactttaatgcggaacctctc 260
Query: 61 aggtttcgaaattatgagaaataaatgtctattttttttaattaattcagtctgtacttt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 aggtttcgaaattatgagaaataaatgtctattttttgtaattaattcagtctgtacttt 320
Query: 121 tctgttacagtatcttcaacagacaaagtgatcaggtatgaaagcagactgaacaagaag 180
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 321 tctgttacagtatcttcaacagacaaaatgatcaggtgtgaaagcagactgaacaagaag 380
Query: 181 agaaaattaaatctatcttctataaaagaaaatgagcaagatcaaaaggtcttgaaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaattaaatctatcttctataaaagaaaatgagcaagatcaaaaggtcttgaaagat 440
Query: 241 gcatgaagacatgccaactagattcagtgatttgctttgttttagttaaatgaagttgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatgaagacatgccaactagattcagtgatttgctttgttttagttaaatgaagttgaa 500
Query: 301 aagataaacagaattttctgttaaggatctcttagctcattagaaacgctcattagggaa 360
||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 501 aagataaacagaattttctgttaaggatctcttagctcattagtaaggttcattagggaa 560
Query: 361 atattttcctgcccacactcactttatagtatcaaaacttcacactccttaggtctacaa 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattttcctgcccacacttactttatagtatcaaaacttcacactccttaggtctacaa 620
Query: 421 tactcaaattcaactatgggcataatgatttgtaacccactgttctcaaaaaa-gttcta 479
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cactcaaattcaactatgggcatcatgatttgtaacccactgttctcaaaaaaagttcta 680
Query: 480 aatatagtttagttaaatccatgggatttcaacaaaacaggatggaatgtcgacatattt 539
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 681 aatatagtttagttaaatccatgggatttcaataaaacaggatggaatgtcaacatattt 740
Query: 540 ccctactgccaagaagataatgactggttcaagtgaaatgatctttag 587
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccctactgccaagaagataatgactggttcaagtgaaatgatctttag 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_n22.g1 MSMg01no060_n22.g1 CHROMAT_FILE:
MSMg01no060_n22.g1 PHD_FILE: MSMg01no060_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:42 2005
(410 letters)
>mm_chr15_17418391_17419200
Length = 810
Score = 623 bits (322), Expect = 0.0
Identities = 375/410 (91%), Gaps = 28/410 (6%)
Strand = Plus / Minus
Query: 1 catactaattagcactatgcagaaagcctgtatagatccaagctagacaggatctcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 catactaattagcactatgcagaaagcctgtatagatccaagctagacaggatctcaatg 364
Query: 61 ctaagagcagaaagacaatatgtgcttctaccagtaatgaacagaaagacaacgtatgct 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctaatagcagaaagacaatatgtgcttctaccagtaatgaacagaaagacaacgtatgct 304
Query: 121 cccaccattgatgatgaagatatctgtaactgaatctggcatgaagatgtaagttttaga 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cccaccattaatgatgaagatatctgtaactgaatctggcatgaagatgtaagttttaga 244
Query: 181 aatggagtcacacaaggtacaataaccactaattttcctagattttatttatttatttat 240
|||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 243 aatggagtcacacaaggtacaataaccactaattttcctagattttct--at-------- 194
Query: 241 ttatttatttatttatttatttatttatttatttatttagctcatattgctttgcttgtt 300
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ------------------atttatttatttatttatttagctcatattgctttgcttgtt 152
Query: 301 ttggcatcttttatcttttattttgttttatacatttctatgctgcgcttatgtgtttgt 360
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 151 ttggcatcttttatcttttattttgttttatatttttctatgctgtgtttatgtgtttgt 92
Query: 361 ttatttctaaaggaattttagtctaccaatatagttgctctggaaaggga 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ttatttctaaaggaattttagtctaccaatatagttgctctggaaaggga 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
