BAC Information

Click to search

BAC

Clone NameMSMg01-061D04
Chromosome15 (Build37)
Map Location 66,352,631 - 66,454,134
singlet/doubletdoublet
Overlap geneTmem71, LOC100040881, Phf20l1
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860
Downstream geneTg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061D04.T7 (MSMg01no061_d04.b1)MSMg01-061D04.TJ (MSMg01no061_d04.g1)
ACCAG287463AG287464
length769720
length of high quality
(start - end)
346 (45 - 390)337 (72 - 408)
definitionCHROMAT_FILE: MSMg01no061_d04.b1 PHD_FILE: MSMg01no061_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:06 2005CHROMAT_FILE: MSMg01no061_d04.g1 PHD_FILE: MSMg01no061_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:06 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(66,352,631 - 66,352,867)(66,453,802 - 66,454,134)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCACTCCGCGGAA
TTCCTTGTTGTTTCAATTCTCTCTGTGTCACTAAATGATTACCATATTCG
CCCCTCTCCCTATGCTGCTCTGTCCTGCCTCATGATGACAGTTCAGACCC
ACAGGACCCCGAATTTTAAATGTGTCCCAGCAGGAGAAGACTGTGCCAAG
TTGCTTACAAAAATAATTTTTATCAATAAAGCATGTGATCTCTTTATAAT
AATGAAAAAGTACAAATTTTTGTATTAGAGATCATTTTCGATATTTCTAG
TATTTTAAAAACAAAATATTTTAAACAGTGGCTCTCTGACTATTGTTTCA
GTTATTGAGACAAAACTGTCTACTTTGGTGTACATTGCCTGGATCTTGGC
TCTTGACCTACGTTTGCCTTATTGCAGAAGGCCATCTTTTGATGCAAACA
TGTAAATACTCCTCAAAAGTTGCAAATAATCAGGAAACAGACTTCATATC
ATTGTGCATCTGCTATGTATAATGGATCATGCTGATATTCCAATTGTTCT
GATTGTATATCCATTAAAAGGTTTGACTCCGGGATAGATCCTAGAAGATA
AATCTCAGGGCATTATTTTCTGATTAGTTTATGACCCTCTCTCTCTAAGT
GGTATATTGGTACCTTTATGTTGTTCCCACCAATTTATCAGGCCCTGAAT
ATGATATGAATTAAGTAAATTGATACTTTGTTCCTGGACAACACTTATAA
ATTTCACTCTACTAAAGAG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGCCTCCACGCTTTGTTACTTGTATGA
CTTGACTACGTGGTTTAATGCCTCCATACTTTTGCTTCCTTATTGTCAAT
AGAGCAAGAATACCTACTACTGCTCTTTTAAGATTGTATGAGACAGAGTA
AGTAAATACTTTGGTCAGTAATTGGTAAGTGTGTTGTTTTACTTTGTAGT
TGGGGGTATTTTGAAGCTACACTATTTCATAAATAGCACAATTGGGGCTC
TAAGCAGACAAAGAAGTTATGTAAAGGTTCCGGGCCATCTATGGAGGCTG
ATGCAGCACCACATCCTTAAGCAACTCAGAAGGTACTGGCAGTCTTTTGA
ATGGTTGGCACAGACACCCCGCTGCTTCTGTGACAATCTAGCCACAATTC
TTCTTCAGAGCATCCAAATAAAATATTCCATTTCACGGCAAAGTATATTA
GTTTTTAATAACATATTAACTGTTATTTTAACAACACATACAAGCTGATA
TTTTACCTCTTATTTCCTAAAAGTTATACTTGTGATTTCTGCGACATGTA
TGCCCTTTGCCACTTCCCCTATTGTTAGGTAACCAATAGAACCCATACCA
CGATTTTGCTAATCCTTTTTGGACTAACTATATGCGATATTCCTCGGTAT
CCTCCACTTTCCTCCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_d04.b1 MSMg01no061_d04.b1 CHROMAT_FILE:
MSMg01no061_d04.b1 PHD_FILE: MSMg01no061_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:06 2005
         (346 letters)



>mm_chr15_66352322_66353067
          Length = 746

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                       
Query: 110 ggaccccgaattttaaatgtgtcccagcaggagaagactgtgccaagttgcttacaaaaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaccccgaattttaaatgtgtcccagcaggagaagactgtgccaagttgcttacaaaaa 369

                                                                       
Query: 170 taatttttatcaataaagcatgtgatctctttataataatgaaaaagtacaaatttttgt 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taatttttatcaataaagcatgtgatctctttataataatgaaaaagtacaaatttttgt 429

                                                                       
Query: 230 attagagatcattttcgatatttctagtattttaaaaacaaaatattttaaacagtggct 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 attagagatcattttcgatatttctagtattttaaaaacaaaatattttaaacagtggct 489

                                                                    
Query: 290 ctctgactattgtttcagttattgagacaaaactgtctactttggtgtacattgcct 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctctgactattgtttcagttattgagacaaaactgtctactttggtgtacattgcct 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no061_d04.g1 MSMg01no061_d04.g1 CHROMAT_FILE:
MSMg01no061_d04.g1 PHD_FILE: MSMg01no061_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:06 2005
         (337 letters)



>mm_chr15_66453602_66454338
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggcctccacgctttgttacttgtatgacttgactacgtggtttaatgcctccatactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttggcctccacgctttgttacttgtatgacttgactacgtggtttaatgcctccatactt 474

                                                                       
Query: 61  ttgcttccttattgtcaatagagcaagaatacctactactgctcttttaagattgtatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttgcttccttattgtcaatagagcaagaatacctactactgctcttttaagattgtatga 414

                                                                       
Query: 121 gacagagtaagtaaatactttggtcagtaattggtaagtgtgttgttttactttgtagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gacagagtaagtaaatactttggtcagtaattggtaagtgtgttgttttactttgtagtt 354

                                                                       
Query: 181 gggggtattttgaagctacactatttcataaatagcacaattggggctctaagcagacaa 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 353 gggggtattttgaagctagactatttcataaatagcacaattggggctctaagcagaaaa 294

                                                                       
Query: 241 agaagttatgtaaaggttccgggccatctatggaggctgatgcagcaccacatccttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agaagttatgtaaaggttccgggccatctatggaggctgatgcagcaccacatccttaag 234

                                            
Query: 301 caactcagaaggtactggcagtcttttgaatgg 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 caactcagaaggtactggcagtcttttgaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)