BAC Information

Click to search

BAC

Clone NameMSMg01-061P06
Chromosome15 (Build37)
Map Location 15,040,685 - 15,041,025
singlet/doubletsinglet
Overlap geneLOC100040033
Upstream geneLOC674819, LOC100040024
Downstream geneLOC100040046, EG239341, LOC100040087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P06.T7 (MSMg01no061_p06.b1)MSMg01-061P06.TJ (MSMg01no061_p06.g1)
ACCAG288042AG288043
length763720
length of high quality
(start - end)
269 (43 - 311)341 (73 - 413)
definitionCHROMAT_FILE: MSMg01no061_p06.b1 PHD_FILE: MSMg01no061_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005CHROMAT_FILE: MSMg01no061_p06.g1 PHD_FILE: MSMg01no061_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCCTGATCTTTCTCGAACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCCAACGAGATAATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAAATTGTTCTGAAGTTCTCTATCTTTGTAGAATCTT
TCAGAGTTTTAGCTATCATACTCATAGAGTCTTCATATAATGAGTTGGCC
ATAGTACTTTCTACTCCCACCTTACTAAAAAGTTAGTACTGATTTGGTAT
TATATCTTTTTATAATCACTAAGAAAACTCTGTTCAATACCCAACCGTTC
CAGATTATCTTATTCTCACAATCACTATCTTATAAATCGCTTTTACTTTA
TTTTTATTTTTAACTAGTTTTAATCATAGCTCTTTAAAAAATTTATTACT
TTTCTTTATCATAAAATAAAACTAACTACTCCTAATACTTGAACAATACT
CTCTATTTTTTTTTTTTATAACTACCTTTTCTTCTTTTAATTCTTTCTCC
TTTCTCTCATTTATTTACTATTATACTTAATAATATTTATTTATTATTAT
TATAATATTCTTG
ATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAGTGAAGCTATGACTTGGTATAGTGT
GGATTCATCTTATTCCAAGTTGAAGTTTCTTCCTAAATCTAGCTTTTAGA
GATGAAGCTTATACTTTAAAATAAATAAAAGTGAACATACAAATACAAGG
CATTTGAACTCCTTTAGTTTTGAGCAGTGTAGTCTACTTATCATTTTCTG
ACACAAAACACTTAAAAAGATATAACTTGGGTGTAACTGATGTATCTGCA
ATATATTTACCAAAAAGTATAAAAATGTATTTCAAAAAAATATTTTCAAC
ATGTGTGCACATTCACAAATATAAAAATGAACTTTTGTAACATATGCCTG
ATTTAAAGTAAAACGCCCCCGCGAATTTACTCTAAGTATAAAGTTTATAG
AGTTTAAGTGGTAAAACAGCACATTTTATTTTACTCCCATGTGGCCAATC
TTTTATAGTAATAAAAAATAATCATAGTTTAATGCAAATGTACATTTATT
TTTCTGCCTTTTCTTTTATCTTTCCTTCCTGGCCAAAGTCAGACTCTTTC
CTACTTTCAACAATGGCCATTATGCCTACTTCAAGGTAGAATTTCATTAT
AGATAGGAAAACCTAAGCTCTTTTATCTCAATCTTATTAAATTACTTGCC
CGACTATGTACATTGCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p06.g1 MSMg01no061_p06.g1 CHROMAT_FILE:
MSMg01no061_p06.g1 PHD_FILE: MSMg01no061_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:04 2005
         (341 letters)



>mm_chr15_15040485_15041225
          Length = 741

 Score =  659 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtgaagctatgacttggtatagtgtggattcatcttattccaagttgaagtttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtgaagctatgacttggtatagtgtggattcatcttattccaagttgaagtttcttc 260

                                                                       
Query: 61  ctaaatctagcttttagagatgaagcttatactttaaaataaataaaagtgaacatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaatctagcttttagagatgaagcttatactttaaaataaataaaagtgaacatacaa 320

                                                                       
Query: 121 atacaaggcatttgaactcctttagttttgagcagtgtagtctacttatcattttctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaaggcatttgaactcctttagttttgagcagtgtagtctacttatcattttctgac 380

                                                                       
Query: 181 acaaaacacttaaaaagatataacttgggtgtaactgatgtatctgcaatatatttacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaacacttaaaaagatataacttgggtgtaactgatgtatctgcaatatatttacca 440

                                                                       
Query: 241 aaaagtataaaaatgtatttcaaaaaaatattttcaacatgtgtgcacattcacaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagtataaaaatgtatttcaaaaaaatattttcaacatgtgtgcacattcacaaatat 500

                                                    
Query: 301 aaaaatgaacttttgtaacatatgcctgatttaaagtaaaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaatgaacttttgtaacatatgcctgatttaaagtaaaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)