BAC Information

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BAC

Clone NameMSMg01-062B08
Chromosome15 (Build37)
Map Location 16,771,522 - 16,772,332
singlet/doubletsinglet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062B08.T7 (MSMg01no062_b08.b1)MSMg01-062B08.TJ (MSMg01no062_b08.g1)
ACCAG288141AG288142
length1,2001,124
length of high quality
(start - end)		317 (84 - 400)811 (81 - 891)
definitionCHROMAT_FILE: MSMg01no062_b08.b1 PHD_FILE: MSMg01no062_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:18 2005CHROMAT_FILE: MSMg01no062_b08.g1 PHD_FILE: MSMg01no062_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTTNTNNNNTGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTATCCCAGGTGATTCCTGTTAAACCTTCTGTGTTTGCATT
CCTCTGTTTTATGTCCTAATCCAGTAACCTCCCCGTACTGTGCGGGTATG
TCACCCAACTTCCTTATTGTCTCTGTATAAAAAGTCTGATGCTCCATTAG
ACATTACATTCAGATCCTACACAACCTCTCCTGTGTGCATCTGTCTGTCA
ATTCATCTGACGCTTTGCCCACCTGCGACTAGAGACTCGTTCCACGTAGA
CAAAGGGGCCCAGAGGGTCTGCAGCATGCCTCAGTACAGGGGAATGCCGG
GGCTAAGAAGTGGGAGTGGGTGGGTACGGGAGTGTGTGTGGGGGGGTATT
TTTTTTNNNTTTNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTCTCCCCTT
TTTTTTTTCTCCCTCCTCCTTTTCTTTTCTTTCTTTTTTTCTTTTTTTTT
TCTTTTCTTTTTCTTTTCTTCTTTCTTTTTTTTTTTCTCTTTCTTTCCTC
TTTTTTTCTTCCTTCTTTTTTCTTTTTTTTTTTTTCTTTTCTTTTTTTCT
TTTTTCTTTCTTTTTTTTCTCCCTTCTCTTTTTTTTTTTTTTCCCTTTTC
TTTTTTTTCTTTCTTCTTTTCTCTCTTTCCTTTCTTCTCTTCCTTCTCTT
TTTTTCTTTTTTTTCTTTTCTTTTTCTTCTTTCTTTTTTTCCTCTTCTTT
CTTTTCTTTCTCTTCTTCTCTTCTTTTTTTTCTTTTTTTTCTTTTCTTCT
CTTCTCTTTTTTTTTCTTCTTTTTCTTCCTCTTTCTTTCTTTTTTCTCTT
TCTTCTCCTTTTTCTTTTTCTTTTTTTCTCTNTTTTTCTTCTTTTTTTCT
TTTTTCTTTTTTTCCTTTCTTCTCTCTTTCCTTTCTTTTCTTCTTTTTTT
TTTTTTTTTTTTTCTTTTCTCTTTTTTCNTTTTTCTTTTTTTTCTCTTCT
TTTCTTTTCTTTTCTTTNTCTTTTCTTCCTTCTCTTCTCTTCTTCTTCTT
TTTTCTTTTTTCCCTTCTTTCTCTTTCTTCTCTCCTTCTCTTTTCTCTCT
TCCTTTCTCTTCCTTCCTTCTTCTTTTTTTCTTTTTTCTCTTTTCTTTCT
TTCCTCTTCTTCCTTTTTTCTTTTTTTTNTTTTTCTTTTCTTTTTTTTTC


NNNNNAACTGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACTTATTGCCTGGTTAGAGAAGATGGCTGGTT
CAGTCTTCCTATACTCCATTTCTAGGAGTCTTACCTAGGCTCACTCTCAT
AGACTCCTAGGGGTTCTCTGAGTGTTCACTCTAGCTCATCCCAAAAATGC
TCCCCCGCCCCATTCCAGTTGTCTTTGCCAGTTCTTTCCTTCCATTGTTC
CCCAACCTGAGCGCCATTGTTCCCATCCCCACTCTCCTTTCTGATTTCTC
CCTATCTTCCCACCTGCTATATTTATTTGATGTCCCGTTTACTTTGACAG
TTATGTCTCCTCCTACTTGAGACTGCTTTCTTATTTAGATCCCCTGGGTC
TGTGGATTTACATTACTTAACAGCTAATATCACTCATATATGGGCACATA
CCATGTATTTCTCTCTGAGTCTGGGTTACCTCACTTAGTATGATCTTTTC
TACTTCCATCCATTTGCCTGCAAATGTCATAACATCGCTGTCTTTAACAG
AGGAGTAACACACTATTGTGTAAATATATCATGTTTTCTTTATGCCTTCT
TTGGTTGAGGGACACTTAGGTTGTTGGTAATATCTGGCTATTATGAATAA
AGCTGCTATGAACATAGCTGACAAAGTTTCTTTGTTGTATGCTGGCATGT
CTTTTGTATATATGTCCAGTTTTATAGTAAGTAAAAAATATTTTATGCTC
CACCCAGTCACTATCAGTCATATTTTCACCTTTCTATTAAATGCTGTTTT
TCAGTAAAATACCATAGGTTTGTGCTATATTCTAAAATGATAGACTCATT
ATTTATAGTTATACTGTTAATGATGTTTTCCAATATCTAAATGCCTTCAT
ACAATTTTCTGTATTAAATAATGCACTGGAAGTAATACATTATTCATGAC
CCTTTATTATTTTTGATATTTTCTAATTTATATCCCAAATATTAGTAACT
TCCAAGGGATGGTTTCTGCTTAAAAAGGCTGGAAAATAAAAGGGGGGCAA
ACTTTTTTTTCTTTGGTAGGGAAATATATTGTGAATTTTCCCAGTTCTTG
GTGCAAAACCTTGGGATATTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_b08.g1 MSMg01no062_b08.g1 CHROMAT_FILE:
MSMg01no062_b08.g1 PHD_FILE: MSMg01no062_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:18 2005
         (811 letters)



>mm_chr15_16771322_16772532
          Length = 1211

 Score = 1560 bits (807), Expect = 0.0
 Identities = 810/811 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttagagaagatggctggttcagtcttcctatactccatttctaggagtcttacctaggc 60
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201  gttagagaagatggctggttcagtcttcatatactccatttctaggagtcttacctaggc 260

                                                                        
Query: 61   tcactctcatagactcctaggggttctctgagtgttcactctagctcatcccaaaaatgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261  tcactctcatagactcctaggggttctctgagtgttcactctagctcatcccaaaaatgc 320

                                                                        
Query: 121  tcccccgccccattccagttgtctttgccagttctttccttccattgttccccaacctga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  tcccccgccccattccagttgtctttgccagttctttccttccattgttccccaacctga 380

                                                                        
Query: 181  gcgccattgttcccatccccactctcctttctgatttctccctatcttcccacctgctat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  gcgccattgttcccatccccactctcctttctgatttctccctatcttcccacctgctat 440

                                                                        
Query: 241  atttatttgatgtcccgtttactttgacagttatgtctcctcctacttgagactgctttc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441  atttatttgatgtcccgtttactttgacagttatgtctcctcctacttgagactgctttc 500

                                                                        
Query: 301  ttatttagatcccctgggtctgtggatttacattacttaacagctaatatcactcatata 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  ttatttagatcccctgggtctgtggatttacattacttaacagctaatatcactcatata 560

                                                                        
Query: 361  tgggcacataccatgtatttctctctgagtctgggttacctcacttagtatgatcttttc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  tgggcacataccatgtatttctctctgagtctgggttacctcacttagtatgatcttttc 620

                                                                        
Query: 421  tacttccatccatttgcctgcaaatgtcataacatcgctgtctttaacagaggagtaaca 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  tacttccatccatttgcctgcaaatgtcataacatcgctgtctttaacagaggagtaaca 680

                                                                        
Query: 481  cactattgtgtaaatatatcatgttttctttatgccttctttggttgagggacacttagg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  cactattgtgtaaatatatcatgttttctttatgccttctttggttgagggacacttagg 740

                                                                        
Query: 541  ttgttggtaatatctggctattatgaataaagctgctatgaacatagctgacaaagtttc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  ttgttggtaatatctggctattatgaataaagctgctatgaacatagctgacaaagtttc 800

                                                                        
Query: 601  tttgttgtatgctggcatgtcttttgtatatatgtccagttttatagtaagtaaaaaata 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  tttgttgtatgctggcatgtcttttgtatatatgtccagttttatagtaagtaaaaaata 860

                                                                        
Query: 661  ttttatgctccacccagtcactatcagtcatattttcacctttctattaaatgctgtttt 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  ttttatgctccacccagtcactatcagtcatattttcacctttctattaaatgctgtttt 920

                                                                        
Query: 721  tcagtaaaataccataggtttgtgctatattctaaaatgatagactcattatttatagtt 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  tcagtaaaataccataggtttgtgctatattctaaaatgatagactcattatttatagtt 980

                                           
Query: 781  atactgttaatgatgttttccaatatctaaa 811
            |||||||||||||||||||||||||||||||
Sbjct: 981  atactgttaatgatgttttccaatatctaaa 1011


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 811
Length of database: 1211
Length adjustment: 10
Effective length of query: 801
Effective length of database: 1201
Effective search space:   962001
Effective search space used:   962001
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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