Query= MSMg01no062_d01.b1 MSMg01no062_d01.b1 CHROMAT_FILE:
MSMg01no062_d01.b1 PHD_FILE: MSMg01no062_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:31 2005
(723 letters)
>mm_chr15_14693041_14694163
Length = 1123
Score = 1382 bits (715), Expect = 0.0
Identities = 721/723 (99%)
Strand = Plus / Minus
Query: 1 caagtcataccacttagctgcagtccctggcgcctttgggactgccgccacacccgctcc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 caagtcatacgacttagctgcagtccctggcgcctttgggactgccgccacacccgctcc 929
Query: 61 tcacataacagtaatatcattcccttagcatttttgtggtagaagctcttgatgcagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tcacataacagtaatatcattcccttagcatttttgtggtagaagctcttgatgcagaaa 869
Query: 121 caattgtaattctaaaattaatgctatatcacagacacataaatatatatgtctaggtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 caattgtaattctaaaattaatgctatatcacagacacataaatatatatgtctaggtta 809
Query: 181 agaatgtttcaaaaccaatttaaaaggtggaaattttatgcaaatattagaatgttttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 agaatgtttcaaaaccaatttaaaaggtggaaattttatgcaaatattagaatgttttta 749
Query: 241 aaaccaaaatcttaacttgttttccttacaaccctttgtccttgaatgtgtcagggtcaa 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 748 aaaccaaaatcttaacttgttttccttacaaccctttggccttgaatgtgtcagggtcaa 689
Query: 301 tgaagagtttgacccagtaccccatacataattactgtgatattatgaagtaaaacacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgaagagtttgacccagtaccccatacataattactgtgatattatgaagtaaaacacaa 629
Query: 361 taaactgtaggcagtaaaagctttctctccactgtttttggaacaaccatgatatatatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taaactgtaggcagtaaaagctttctctccactgtttttggaacaaccatgatatatatg 569
Query: 421 aaaggaataggatgaagttagctttctataactgccataaatacattcatgtgatttttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaaggaataggatgaagttagctttctataactgccataaatacattcatgtgatttttc 509
Query: 481 ttggagttggatagcagtgtgcatctccaggtaaggaatttaccacagctcttcagaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttggagttggatagcagtgtgcatctccaggtaaggaatttaccacagctcttcagaaga 449
Query: 541 ttttgaaatcctttctgcagctaaggatctatggattcactacatacctgaaaatatata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttttgaaatcctttctgcagctaaggatctatggattcactacatacctgaaaatatata 389
Query: 601 attctgtatatgcaaattgtatatttgtatgaaaccaagtattatacaatttttagcaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attctgtatatgcaaattgtatatttgtatgaaaccaagtattatacaatttttagcaga 329
Query: 661 atatttagcacaaaatgtctgtttcaaactatgcagaaatttagaatcaggacatattat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atatttagcacaaaatgtctgtttcaaactatgcagaaatttagaatcaggacatattat 269
Query: 721 ctg 723
|||
Sbjct: 268 ctg 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_d01.g1 MSMg01no062_d01.g1 CHROMAT_FILE:
MSMg01no062_d01.g1 PHD_FILE: MSMg01no062_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:31 2005
(692 letters)
>mm_chr15_14557879_14558968
Length = 1090
Score = 1187 bits (614), Expect = 0.0
Identities = 669/690 (96%), Gaps = 8/690 (1%)
Strand = Plus / Plus
Query: 9 aaaacaaaacaaaacaaaacaaaacaaaacaaacaaaaaacccaaccaaacaaacaaaag 68
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaacaaagcaaaacaaaacaaaacaaaacaaacaaaaaacccaaccaaacaaacaaaag 262
Query: 69 aaaagaaaagaaaaggaatgaaaagaaaaggaaag-aaatga----aaagaaaaggaaag 123
||||||||||||||| || ||||||||||| |||| ||| || ||||||||| ||||
Sbjct: 263 aaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaaggaaaggaaagaaaagaaaag 322
Query: 124 aaaagaaaagaaaaagtgtttgggcctaaaattggctgtattttagataagttaatttat 183
|| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 323 aagagaaaagaaaaagtgtttgggcctaaaattggttatattttagataggttaatttat 382
Query: 184 tactttcttcaaataaaatagttgtagtgagctgaatatttggttagtattgcaagattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tactttcttcaaataaaatagttgtagtgagctgaatatttggttagtattgcaagattt 442
Query: 244 cttattcctaaacattatttattcattaagtataaaaggtatttctaggtttctacttag 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 cttattcctaaacattatttattcattaagtataaaaggtatgtctaggtttctacttag 502
Query: 304 gtttgtgtttacttatgcactaaatgcctttgtaataattttgatttatggtctcacaga 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtttgtgtttaattatgcactaaatgcctttgtaataattttgatttatggtctcacaga 562
Query: 364 gaaaaatacatgaccacaaggtggcagtagcacacaatgagcattgctt-ggaagccttt 422
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 563 gaaaaatacatgaccacaaggtggcagtagcacacaatgagcattgctttggaagccttt 622
Query: 423 ggacctgcggtaggtggatgaatatcttacggagtcttcatctcatagactacaggacaa 482
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 ggacctgcggtaggtgtatgaatatcttac--agtcttcatctcatagactacaggacaa 680
Query: 483 gatcacaatctagaagaagcagaacaagggttttataaggaaagagaattgaagaatagg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatcacaatctagaagaagcagaacaagggttttataaggaaagagaattgaagaatagg 740
Query: 543 attaattctttattacctttactgagtcttcagatggatcatttgtgagagagaaaatta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attaattctttattacctttactgagtcttcagatggatcatttgtgagagagaaaatta 800
Query: 603 tgaaggaaatatcttgaatgttttaatgaacttggaatttatcttttctatgaagaattg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaaggaaatatcttgaatgttttaatgaacttggaatttatcttttctatgaagaattg 860
Query: 663 ttcaatgcagtttcacacggcatggaaagc 692
||||||||||||||||||||||||||||||
Sbjct: 861 ttcaatgcagtttcacacggcatggaaagc 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1090
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1080
Effective search space: 736560
Effective search space used: 736560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
