Query= MSMg01no062_f03.b1 MSMg01no062_f03.b1 CHROMAT_FILE:
MSMg01no062_f03.b1 PHD_FILE: MSMg01no062_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:47 2005
(735 letters)
>mm_chr15_5232845_5233979
Length = 1135
Score = 926 bits (479), Expect = 0.0
Identities = 488/491 (99%)
Strand = Plus / Minus
Query: 245 aaggttggtcaaagagtactaagttacagttagatgaagaaaggctactttgtatactat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 aaggttggtcaaagagtactaagttacagttagatgaagaaaggctactttgtatactat 1076
Query: 305 tacaaaagagagtgatgaaaattaaagataacgtatgcatctttgaaaagctgaaaagct 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 tgcaaaagagagtgatgaaaattaaagataacgtatgcatctttgaaaagctgaaaagct 1016
Query: 365 ttctaaatatttccagcacaaaaaatgtcggagatttgaagagataagctggtctaaact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1015 ttctaaatatttccagcacaaaaaatgtcggagatttgaagagataagctggtttaaact 956
Query: 425 tacttcaacttgctttttactgtattattacacaatctccaatgacctccatttattcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tacttcaacttgctttttactgtattattacacaatctccaatgacctccatttattcac 896
Query: 485 aaattaaagtcatgaaattatttgagtgggttatgaataccactttttaaagtagaaaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 aaattaaagtcatgaaattatttgagtgggttatgaataccactttttaaagtagaaaag 836
Query: 545 aatgaaaatcaataatgctgacaataaccccatacatttcctttgataatgtgatacatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aatgaaaatcaataatgctgacaataaccccatacatttcctttgataatgtgatacatg 776
Query: 605 taatggggataaaaaatttatttcttagtgtaacatcatcaaaagtgcttgaaaacatta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 775 taatggggataaaaaatttatttcttagtgtaacatcatcaaaagtgcttgaaaatatta 716
Query: 665 cttactataataacagtgggagaggaaaaggggaacaggatcagatatggggtggggttg 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cttactataataacagtgggagaggaaaaggggaacaggatcagatatggggtggggttg 656
Query: 725 gggaagcccag 735
|||||||||||
Sbjct: 655 gggaagcccag 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space: 815625
Effective search space used: 815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_f03.g1 MSMg01no062_f03.g1 CHROMAT_FILE:
MSMg01no062_f03.g1 PHD_FILE: MSMg01no062_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:47 2005
(730 letters)
>mm_chr15_5109099_5110228
Length = 1130
Score = 1295 bits (670), Expect = 0.0
Identities = 715/730 (97%)
Strand = Plus / Plus
Query: 1 cacatagactgtctgggtgagtctgggccctatggaatctctttaaccatgatttatcta 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 201 cacatagactgtctgggtgagtctgggcaagatggaatctctttaaacatgatttatcta 260
Query: 61 cttttatttgcatagatgttttgtctacatatatacccttgcaccatgtctgtacttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttatttgcatagatgttttgtctacatatatacccttgcaccatgtctgtacttagt 320
Query: 121 gcccaagaaggctagaagaggttctcgtatcccctggaactggagttatagatggttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccaagaaggctagaagaggttctcgtatcccctggaactggagttatagatggttgca 380
Query: 181 ggtcgcacgtgagtgccgagagtctgacctggactctcgagaagcgcagctcatgccact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ggtcgcacgtgagtgccgagagtctgacctggactctcgagaagcgcagctcgtgccact 440
Query: 241 gagccatctctttagcctaaaatccatgtatttttaaattttctatttgaaaatggaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagccatctctttagcctaaaatccatgtatttttaaattttctatttgaaaatggaaac 500
Query: 301 tacatgccattgatccaaaactgaaaacagaacaaaaacaacagcagcagcagtagccag 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatgccattgagccaaaactgaaaacagaacaaaaacaacagcagcagcagtagccaa 560
Query: 361 tcacgggggctgttaatgataggggatcatgtgcagtagccaatcaccagggctgttaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacgggggctgttaatgataggggatcatgtgcagtagccaatcaccagggctgttaac 620
Query: 421 gataggggatcatgtcagtgtcccaggagagttcatgtatgtagttttgggcatatgtgt 480
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 621 gataggggatcatgtcagtgtcccaggggagttcgtgtatgtagttttgggcatatgtgt 680
Query: 481 gctgtatgtgtatgtcaagccagaggacatggcttgctttaccattttctgcttttgttt 540
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 gctgtatgtgtatgtcaggccagaggacatggcttgctttatcattttctgcttttgttt 740
Query: 541 ccttgagataatatctcttattgaaactagagctaggtagttagccagtagcaccaggaa 600
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 ccttgagacaagatctcttattgaaactagagctaggtagttagccagtatcaccaggaa 800
Query: 601 tccccctgtctctgccaacctgtgctctttctcccagtgttgggctgataggcagggatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tccccctgtctctgccaacctgtgctctttctcccagtgttgggctgataggcagggatc 860
Query: 661 atgctaggttcttctctttttctttttaaaagtgtgttgtggaaatttgaatttagagcc 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 861 atgctaggttcttctctttttctttttaaaagtgtgttgtgggaatttgaatttagagcc 920
Query: 721 tcctgcgtat 730
||||||||||
Sbjct: 921 tcctgcgtat 930
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space: 806400
Effective search space used: 806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
