BAC Information

Click to search

BAC

Clone NameMSMg01-063M07
Chromosome15 (Build37)
Map Location 86,965,049 - 86,965,357
singlet/doubletsinglet
Overlap genenone
Upstream geneBC021523, Cerk, LOC100042300, Tbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063M07.T7 (MSMg01no063_m07.b1)MSMg01-063M07.TJ (MSMg01no063_m07.g1)
ACCAG289421AG289422
length1,124774
length of high quality
(start - end)
---310 (133 - 442)
definitionCHROMAT_FILE: MSMg01no063_m07.b1 PHD_FILE: MSMg01no063_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:16 2005CHROMAT_FILE: MSMg01no063_m07.g1 PHD_FILE: MSMg01no063_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNN
NNNNNNNNNNNNNNNNNNCCCCNNNCCCCCCCTTGGGGGGCGGTANGTAT
CNNACGGCCCGCGGGGCGCCGGCGCCGCCCCTTTTTCCTCGCCCCCCCCC
CCCCCATTTCGCGCAAAGACGGAACAGCAGGCCCCTCTTTCACCGCCCGA
CGACCCGACCAGGAAAACACTCAATTACTGTTACATCCGGTTAGCGTTCT
CGGCGTGGGGGGTTGGGGGGGCGGCGGGGTCGCGNNCNNCNNCGCTNTGG
GGGGGGCCCGCCTCCTTAAAATAAACGGGAAAACCTTCCCAACCTTTAAA
TTCAAGGGGAGGGGCAGGCAAGGGGGCAATTCCTCCGGGGCGGGGGGGCC
AAAAATTTTCCAAAAAAATAAGGGGGCCCCTCCCAAACCCCCAGAGGGGG
GCTCTTTTTTTTTGGGGGGAAAACATAAAGGGGGGGGGAAACTTTTTTTT
TTTAACCCCCCCAAGGGGGGCCCCAAATTCCCTTCCAAACCTTGGGGGCT
TTCCCCCCCGATGGAAAGCCCGGGGGCCTCCTGCCCTTTGCGTTTGGGGC
CCCCCCTCCGGGGGGGGTCCCTTTTAAATTTTTAAAAAAAAAACCCCCTC
CCCCTGTTTTTTTCCCCCCAGAGGGAAAAAGATCCCCCCGGGTGGGAAGA
AATAACAATGAACATCATTTTTTTTTGGGGCCAAGGGGGGTGGGGCGAAA
AAAAAATATATTTGGATCGGACAAATGTCTTTTCCGCCGGGGGGGAAACA
CCCGAGATGAGTGGGGCGCCGCACTTTAATATAGGGAGAGGGCACCGGCG
GGAGTGGGCGGCCACCCCCCCGGGGGTGGGGGACACACCACCTGCCAAAG
AAGAGAGGGGGGGGGGGACTAGCAAAAGGCGGGGGAACAGAAGTTGTGTA
TATATCCCGGCGTGCCGTCTTTCTCTAACAGAACACCGCCCGCGTGTNTC
TTCCCTCTCTCCGCACGGGAGGGGGGAGGGGCTCTCTCGCCGACGTAAAT
ACAAGGACGCGGGAGGAGAAAACC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCNCCCCCC
CCCCNCCCACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCTGGAAGACTAAGG
AAACATAACCCACATATCCCAGGCTGGGTACAAACGTTTTTCTTTGCTTC
CCATGAAAATGACACAGGATCCCTAGCCTGGTGCTGAGAGTACATTGTGG
GTGACAGATGGAAACACCCCCCATGTCTGAGGGTTAATTACTTAGTGTTC
TGGTGCTGTGATAAAATATCATGCCCAACTGAAGGATGGCTTTATATCGG
ATTAGGGTTTCAGACGGATAGAATTCATAATGGCAGAGAAGGCACAACAT
GGCGGCAAAATCATGAATTTGCCCACGTTTTCATCCCCACATATAATCGA
GGAAAGGAAGAGCACGATGTGCCAGAACGGTTATAAAATCTTCCTAGTCC
AAGTCTTGCGTGACATTACTTCCCCCAACTAATGCCCCCCCCACCTTCCT
AAAAGGTTTTTATAAATCCTCCCAACAGCTTCCTTCACACTGACCGACCC
ATGTCTCAAAACACTTTGCGCCCTGTGGGGGCGAAAGGTTCCCCCTTTTA
TACCTACAACCCCGTTCGCCTCATCTCTGTTTAACTTCAATTCCCTCTTT
CCCTTTAAATTTTCCTTCCTTTCTTAACTTATCTTGTTTAACCGCTTCTA
CTCCCCACCTCGTTCCCCCCCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_m07.g1 MSMg01no063_m07.g1 CHROMAT_FILE:
MSMg01no063_m07.g1 PHD_FILE: MSMg01no063_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:16 2005
         (310 letters)



>mm_chr15_86964849_86965558
          Length = 710

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctggaagactaaggaaacataacccacatatcccaggctgggtacaaacgtttttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aactctggaagactaaggaaacataacccacatatcccaggctgggtacaaacgcttttc 260

                                                                       
Query: 61  tttgcttcccatgaaaatgacacaggatccctagcctggtgctgagagtacattgtgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcttcccatgaaaatgacacaggatccctagcctggtgctgagagtacattgtgggt 320

                                                                       
Query: 121 gacagatggaaacaccccccatgtctgagggttaattacttagtgttctggtgctgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagatggaaacaccccccatgtctgagggttaattacttagtgttctggtgctgtgat 380

                                                                       
Query: 181 aaaatatcatgcccaactgaaggatggctttatatcggattagggtttcagacggataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatatcatgcccaactgaaggatggctttatatcggattagggtttcagacggataga 440

                                                                       
Query: 241 attcataatggcagagaaggcacaacatggcggcaaaatcatgaatttgcccacgttttc 300
           |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 441 attcataatggcagagaaggcacaacatgggggcaaaatcaggaagttgcccacgttttc 500

                    
Query: 301 atccccaca 309
           |||||||||
Sbjct: 501 atccccaca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)