BAC Information

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BAC

Clone NameMSMg01-064E22
Chromosome15 (Build37)
Map Location 59,942,868 - 59,943,289
singlet/doubletsinglet
Overlap genenone
Upstream geneEG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik
Downstream geneLOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064E22.T7 (MSMg01no064_e22.b1)MSMg01-064E22.TJ (MSMg01no064_e22.g1)
ACCAG289815AG289816
length1,1621,195
length of high quality
(start - end)
413 (44 - 456)257 (129 - 385)
definitionCHROMAT_FILE: MSMg01no064_e22.b1 PHD_FILE: MSMg01no064_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:08 2005CHROMAT_FILE: MSMg01no064_e22.g1 PHD_FILE: MSMg01no064_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGGGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACTCATCTCATTCTCTCTGAAGCTCTCTCTCCACTGTGTGTGGCC
AGTCAACGACAACTGCTGAATCAATGCCGCGACTCTACTTTCAGGGAATT
AGCTCAGCTCAAAACCACACATACTTTAGAATGGAGGACATAAGAAATGA
TATTGCAGGCTCTTACAGTCTCAACTATCAGCAAGGTTGGGGCTTCAGGA
CGCACACTTCTCTCTAGGTTTCTGACTCCTTAAAGAGCTTTTGTGGGCCA
GCTTGACCATCTAACCTAGGAGCTCATGTCTTTGATATTGCTGGTGGGTT
GGACAGTAATATGAGCAGTGTTTCTTAAAAGCAATTTTGCCTAATCTAAA
GCTCGACTCCAGTACTAATTTAGTGAGTTTCTTAATATCTCTCTGACTGG
AACTTGTTCATCTCCCCCAAGGACAGCGAGTTATATCATGATTTTGATGA
TATGGAACATAAATGATCATAGTTTATATATAAGTAAAACAAAGGGTTTA
GAACAGTTTCTAACATATTGCCACTTCTGCAAACTTTCAAAAGTTTAATT
TTTTTTTAAATTTATTTAGGGTTTAGAACACACTGGACCCTTTCAAGTGC
CAACACCTGAAACCACTTCCTAGGCATTCTTGTCATTTTAGGTTTCTTTT
TTTTATAACTGTGGTTTCTGACTCCCTTCTGATCTAAACATGTTTACCTC
AGATCTTACTTGTCTTATGATTTCCCCCCCCCACCCCTGCCCCATTTCCC
AATGCAAAGGCCAAGTTTTGAACTGTTGGAAATAGTCTTCTTATCTGAAG
TGTGCTTCAGCTCTGTCTCAAAATCTCCGAAAGGTTCAATCAGCCCAAGG
AAGACACACTGTGAGGTAAGGGAGTTGAGCAAAATACTTTTTTGAAAAAA
AAGGCTTTTTTTTGGGGGGGCGTATAGGGGGTGCCCCTCTTAATGAAATT
TTAAAAAAAAAACTTCCCCTTTTTTTCTTTTTGGGAACCTTTGTTCTAAA
AAGGGTTCCCCCAAAAATTCCCGAATGGTTTTTTTAAAGGTGTTTTGTGA
GTTATAATATTTTTGTTTTGCTTCACACTTCAAATATCTTATTTATTCCC
TACTATTAACCC
NNNGGATGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGG
GTGTTGAATATTGTGGAATGCTTTCCCCGCATCTAAAGAGATGATCATGT
GGTTTTTGCCTTTGAGTTTGTTTATATAATGGATTATTTTGATGGATTTC
CGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATGTGTTCTTGGATTTGGTTAGTGAGAATTTTAT
TGAGGATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGATCTTTCTGGGGTTTAGGTATCAAAGTATTGTGGTTTCT
TAGAATGAGTTGGGTAAAGTTCCCTCTACTTCTATTTTGGGGAATATTTT
TTTTTCCCCCCCCCCCANAAANNTTCTTTGCCCCACAAAAAAAAATGTGC
NCTNNNCCCTTCTGGTCCTGGGCTTTTTTTTTTTTTTTTTTGGCGGGGNG
TTTTTTTCTGCCTGCTTCTTTTTCTTTCGGGTCTTTGGTTTTGTTTCTTC
CGTTGCCTTGTTCCTGTTTTTCCTTCGTTTCCTGTTTTTTTGTCTTCCTT
TTGTCTCTTTCTCTCGTTTTTCCTGCTTTTTTTTTCCTTTCCCTTTGTTT
TTTCTTTTTTTTTTTTTTTTTTTTCTTTCTTCTTCTTTTCTTTCTTTTCT
TTTTTTCCCTTCTCCTTCTCCTCTTTTTTTTTTCTTCTTTCTCTCTTTTC
TTCCTCCCTTTTTTTTTCTTTCTTCTTTTTTTTTTTTTTCTTTCTTTTCC
TTTTTTTTCTTTCTTTTCCCTTTTCTTTTCCCTTTCCTTTCTTTTTTTTT
CCTTCTCCTTTTTTCTTCTCTTTTTCTTCTCTTTTCTTTTTCTTCCTTTT
TTCTTTCCTCTCTTCTTTTCTCTTTCTTTTTTTTTTCTTTTTTTTTCTTT
TCTCTCTTTTCCTCTTTTCTCTCTCTCTTTTTCTTTCTTTCTTTTTCTTC
CTTCTTTTTTTTCTCTTCTCTCCCTTCTCTTCTTTCTTCTCTTTTTTTTT
TCTCTCTTTTTCTCTCTTCTCTTTTCTTTCTTTTTTNTTCTTTCTTTTTT
TCCTCTCCTCCCTTCTTCGTCTTCCTCCCTTTCTTCTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_e22.b1 MSMg01no064_e22.b1 CHROMAT_FILE:
MSMg01no064_e22.b1 PHD_FILE: MSMg01no064_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:08 2005
         (413 letters)



>mm_chr15_59942665_59943476
          Length = 812

 Score =  702 bits (363), Expect = 0.0
 Identities = 402/423 (95%), Gaps = 14/423 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcactcatctcattctctctgaagctctctctccactgtgtgtggccagtcaa 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattctcactcatctcattctctctgaagctctctctccactgtgtgtggccagtcta 263

                                                                       
Query: 64  cgacaactgctgaatcaatgccgcgactctactttcagggaattagctcagctcaaaacc 123
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgacaactgctgaatcaatgctgtgactctactttcagggaattagctcagctcaaaacc 323

                                                                       
Query: 124 acacatactttagaatggaggacataagaaatgatattgcaggctcttacagtctcaact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acacatactttagaatggaggacataagaaatgatattgcaggctcttacagtctcaact 383

                                                                       
Query: 184 atcagcaaggttggggcttcaggacgcacacttctctctaggtttctgactccttaaaga 243
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 atcagcaaggttggggcttcaggacgcacacttctctccaggtttctgactccttaaaga 443

                                                                       
Query: 244 gcttttgtgggccagcttgaccatctaacctaggagctcatgtctttgatattgctggtg 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 gcttttgtgggccagcttgaccatctaacctaggagctcgtgtctttgatattgctggtg 503

                                                                       
Query: 304 ggttggacagtaatatgagcagtgtttcttaaaagcaattttgcctaatctaaagctcga 363
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 504 ggttggacagtaatatgagcagtgtttcttaaaagca-tattgcctaatctaaagctcga 562

                                                                       
Query: 364 ctccagtac-------------taatttagtgagtttcttaatatctctctgactggaac 410
           |||||||||             ||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 ctccagtacaaattagctctgataatttagtgagtttcttaatatctctctgactgggac 622

              
Query: 411 ttg 413
           |||
Sbjct: 623 ttg 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 812
Length adjustment: 9
Effective length of query: 404
Effective length of database: 803
Effective search space:   324412
Effective search space used:   324412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)