BAC Information

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BAC

Clone NameMSMg01-067P14
Chromosome15 (Build37)
Map Location 32,786,234 - 32,786,503
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962
Downstream geneSdc2, Pgcp, 1700084J12Rik, Tspyl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P14.T7 (MSMg01no067_p14.b1)MSMg01-067P14.TJ (MSMg01no067_p14.g1)
ACCAG292579AG292580
length669685
length of high quality
(start - end)
318 (39 - 356)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no067_p14.b1 PHD_FILE: MSMg01no067_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:14 2005CHROMAT_FILE: MSMg01no067_p14.g1 PHD_FILE: MSMg01no067_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAA
CATCAAAGTAAATGGCCAGAAGCTGGAAGCAATCCCACTAAAATCAGGGA
CTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAA
GTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAAT
TGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT
ATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAAC
AGCTTCTTTGAAGTAGCCGCACCCCCAATAAACTCAAACAAGTCAATGGC
CTTTCTCTATACCCCCAATAAACAGGCTGAGAAAGAAGTTAGGGAAACAA
CACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGTCGTGACTCTA
ACTAATGAAGTGAAAGATCTGTATGATAAAAACTTCATATCTCTGATGAA
AGAAATTAAGGAAGATCTCAGAAGATGGATAGATCTCCCATGCTCATGGA
TTGGCAGGATCACCTTTGCACATATGGCTATTTTGTCCAAAGCAATCTAC
AGATTCCATGCGTCCCCCA
TCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAGCTCTTAATAAAATTGGAACTA
TGGGATGTTCAGGTAAAGAAATTGACCTAGAGGAAAGTAGTCCTCCATTA
TGTAACTCAGGAAAAAAATAAATAGTTTATGTTTGATCTTATATTTGGAT
ATTAATTTGTTTCTAGTCTGTGTACATAAAGTGAATATCCACCGAAGATC
AGGGAAGAGGAAAATGTTTCCCATGGAAGGGAAAATAGAAGATAGATGGT
GTTGTGGAGAGTAAAGGTTTAACCTAAAATAAAAGAAACAGTTGGAGAGG
AGATATGTTTTTTTTTTACCCCCCCCCCCCCCCGAAAACAAGCAAAATTA
AAGTATTTTTGAAATGCCCCCCACAAAACAAATAATGTATGAGGGGGGTA
GTTATATCTTCTTGTTAATTATTTTTATTAGATTTATCTTATATATTTAC
TTTTAACTTTTTATCTACTTCTCCTATGTTACCATTCTAATTTTCTCCTT
TAAAAATTGTTAATCTTATCATATTTTACCTAATTATTTTATTATCATTT
ATTCCCTGATTCCATCTTTTTTCCTTCAAAAGGGCGATATATTATTGTAT
ATTTTTTTTTTATCTGCTTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p14.g1 MSMg01no067_p14.g1 CHROMAT_FILE:
MSMg01no067_p14.g1 PHD_FILE: MSMg01no067_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:14 2005
         (284 letters)



>mm_chr15_32786031_32786710
          Length = 680

 Score =  472 bits (244), Expect = e-137
 Identities = 265/274 (96%), Gaps = 4/274 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   agctcttaataaaattggaactatgggatgttcaggtaaagaaattgacctagaggaaag 63
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 agctcttaagaaaattggaactatgggatgttcaggtaatgaaattgacctagaggaaag 263

                                                                       
Query: 64  tagtcctccattatgtaactcaggaaaaaaataaatagtttatgtttgatcttatatttg 123
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 264 tagtcctccattatgtaactcaggaaaa----aaatagtttatgtttgatcttatatttg 319

                                                                       
Query: 124 gatattaatttgtttctagtctgtgtacataaagtgaatatccaccgaagatcagggaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatattaatttgtttctagtctgtgtacataaagtgaatatccaccgaagatcagggaag 379

                                                                       
Query: 184 aggaaaatgtttcccatggaagggaaaatagaagatagatggtgttgtggagagtaaagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggaaaatgtttcccatggaagggaaaatagaagatagatggtgttgtggagagtaaagg 439

                                             
Query: 244 tttaacctaaaataaaagaaacagttggagagga 277
              |||||||||||||||||||||||||||||||
Sbjct: 440 gggaacctaaaataaaagaaacagttggagagga 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 680
Length adjustment: 9
Effective length of query: 275
Effective length of database: 671
Effective search space:   184525
Effective search space used:   184525
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)