BAC Information

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BAC

Clone NameMSMg01-067P18
Chromosome15 (Build37)
Map Location 84,622,430 - 84,796,030
singlet/doubletdoublet
Overlap genePhf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik
Upstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik
Downstream geneLOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P18.T7 (MSMg01no067_p18.b1)MSMg01-067P18.TJ (MSMg01no067_p18.g1)
ACCAG292587AG292588
length683675
length of high quality
(start - end)
188 (124 - 311)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no067_p18.b1 PHD_FILE: MSMg01no067_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:15 2005CHROMAT_FILE: MSMg01no067_p18.g1 PHD_FILE: MSMg01no067_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,622,430 - 84,622,613)(84,795,786 - 84,796,030)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGATCCGCGGAATTCATC
ATGGGTGATTTCACCCTGCAAGAGAAGGGAGGGTGCCAAGTGGTTGAGCC
AGGTCCAGGCTGCCCGAGGTAGCAGGAAGGAGAGACTCCTCCTCAGGGTG
ACACTGTAAAGGCATGCTGGGAATGAGCAAGGTGTGTGCCCTGACAGGTA
GTGTTCCAGGGCACTCCTACACACCCTGACTGGGCACTGAGCACAGGAGA
GGCTCCTCCCACAGAGTAGGGCATAGCAGTAACACATTTTCACACTACAC
TCCCTCATTTTATTGGTGTGGCTAGACGCAAGCTGCCCCTTTAGCTTATC
TTCTATTGTATACCCCCCCCCCCCCCACCCAGTCACTCCGGAGAGATTCA
TCTGCTTCCACCCCCAAAAAGAAAAATAAGTACAGCTGTCTCCTTGGACA
ATGTATATAACAGGACTGATTACACCACGTGCACCCCACTGAATCGTGTA
TCCTGCATTTGTTTCCAATGGATATGTCCCTTTCTGTTTTTCTTATAGTT
TTTATCTCTAGCTTATCTACTGTGTTCCACACTTCTTCATCAGCTCTGCT
CTCATTATAATTCCTGTTGATGACTTATATTTTTTCGTCCTTTATTTCTA
CCACTCTATTTTGTCCCCAGCTTTTTCTTCCAT
NACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGAACAGGCTTGGGAAAGGA
AGGGAGAAGGGTTTACCTAGGGGGAGAAAGAAACAGCAGGCTAAAAAGAT
TCAGTTGCTATACCACAGCACCAAAGGATTCTGGGAGGCTGTGACCCAGG
GACTTTATTCAGGCTGTCCAGAGAGGCACGCAAAACAGCTACATCCAGTT
TCTTCACTTGCCCCATGTAGAGGGAGTATCACAGCCCAGTAAGGAATTTT
ACCCCAGACCTCACCATGATTCTGTTAATGTGGGAGGTACAGGAGCAGTC
TGTGTGTGTTTTATTTTTCACCCCCCCCCCCGCTGTATAATTTCAATGTC
TGTATTGCTCAGTGCCCCCACCACAAAAAAAAACTATGGTAGATCTGTCG
AGCCCAGCTGTGGGCATGTAAAACATCTGTGTCCGTCTTTCCTTCCCTGT
GAAGAGGCCTTTCTCCCTCTCCCTTCATGCTTACTGGCTTGTGACCTCAA
GCCATATATTTATGGCATAAGGTATTTTTTGGGACAATGATGCCTGGCCC
ATAGTGTATTCTGCGTTTGGTCCGGGCTGACCATCTCTGTTTAATTCTGT
TGCTCCACCGGTTCTGTCTCTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p18.b1 MSMg01no067_p18.b1 CHROMAT_FILE:
MSMg01no067_p18.b1 PHD_FILE: MSMg01no067_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:15 2005
         (188 letters)



>mm_chr15_84622230_84622817
          Length = 588

 Score =  340 bits (176), Expect = 2e-98
 Identities = 182/184 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaggagagactcctcctcagggtgacactgtaaaggcatgctgggaatgagcaaggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aggaaggagagactcctcctcagggtgacactgtaaaggcatgctgggaacgagcaaggt 260

                                                                       
Query: 61  gtgtgccctgacaggtagtgttccagggcactcctacacaccctgactgggcactgagca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgccctgacaggtagggttccagggcactcctacacaccctgactgggcactgagca 320

                                                                       
Query: 121 caggagaggctcctcccacagagtagggcatagcagtaacacattttcacactacactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagaggctcctcccacagagtagggcatagcagtaacacattttcacactacactcc 380

               
Query: 181 ctca 184
           ||||
Sbjct: 381 ctca 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no067_p18.g1 MSMg01no067_p18.g1 CHROMAT_FILE:
MSMg01no067_p18.g1 PHD_FILE: MSMg01no067_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:15 2005
         (245 letters)



>mm_chr15_84795586_84796230
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctgaacaggcttgggaaaggaagggagaagggtttacctagggggagaaagaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgctgaacaggcttgggaaaggaagggagaagggtttacctagggggagaaagaaacag 386

                                                                       
Query: 61  caggctaaaaagattcagttgctataccacagcaccaaaggattctgggaggctgtgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggctaaaaagattcagttgctataccacagcaccaaaggattctgggaggctgtgacc 326

                                                                       
Query: 121 cagggactttattcaggctgtccagagaggcacgcaaaacagctacatccagtttcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagggactttattcaggctgtccagagaggcacgcaaaacagctacatccagtttcttca 266

                                                                       
Query: 181 cttgccccatgtagagggagtatcacagcccagtaaggaattttaccccagacctcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgccccatgtagagggagtatcacagcccagtaaggaattttaccccagacctcacca 206

                
Query: 241 tgatt 245
           |||||
Sbjct: 205 tgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)