BAC Information

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BAC

Clone NameMSMg01-069F22
Chromosome15 (Build37)
Map Location 44,409,173 - 44,409,709
singlet/doubletsinglet
Overlap genePkhd1l1
Upstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
Downstream geneEbag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069F22.T7 (MSMg01no069_f22.b1)MSMg01-069F22.TJ (MSMg01no069_f22.g1)
ACCAG293643AG293644
length709718
length of high quality
(start - end)
529 (60 - 588)469 (72 - 540)
definitionCHROMAT_FILE: MSMg01no069_f22.b1 PHD_FILE: MSMg01no069_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:06 2005CHROMAT_FILE: MSMg01no069_f22.g1 PHD_FILE: MSMg01no069_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTATTTCCAGAGAACCGCGGAATTCCATAACTT
TCACTGGGTAAGTAAGCATAGAACACATGTGGCTCAATCATTCCTATCAC
CATAGATAGTGTCCAACAATAGTAAAGAGGCATCAAGAAGGAAGTAAGGC
CATTTTTACCTAACCAGCATGCATACATTCCTATAAACTGGTAGACAATG
AAAAAGCCGAGGGGACAAGAGCTAAAGAATGACTCATTTTTAACAAAGTC
CCGATTGCAAATCCACTGATTGTGAACTAATAAATTGTTCAAAACTGCAA
GTCTTTAGGATAATTTGTAATGTAGCAAGAACTAACTGGTGCATTGTTTT
CATTTTGGCCTCTTTGTTTACATTATATACACTGTGGGTTACAATAAAAG
ACATTTTTAAAAATCATACTTAAAATCTAATAATGCAAAGGCTATTTCCA
AAATCCTTAAGTAAGTTTTTCTACTAGCCTTAAAAGTATATTTTGTCTTA
AGAAATTCTTTAAAAGAATAATAACATAGATGTGTAGAAATAAAATGCAG
CGGTAGACACTGAATGTATCTTCCCTAGATCTTTATTACGCCAGNAAGTT
CAACTCCATCTCCTCCTGTACGTGTGGACTGCAAACCATTCTTAGCTGTA
TTGGTTCTAAAGATTTTTTCTTTCATGAAAACATATGGGCTCCCTTGCCC
TTAAAATTA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTATCCTACCACTGAGATCCCTGCACAC
TCACATTCATTACTGCTCTCTTCCCAAAAGCTAGGAAACAGAATTAATCT
AGATGTTTATCAATAGATGACTGAATAAAGGAAAGCTACACAGATGCACG
TATATGAAATGCATTATATTCAGCTGTAAAGAAAATGAGATTTGCAGAAA
AATGGACAGCTCTAATCTTGGTTGTCAACTTCATAGGATCCCAAATCATC
TTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTCACTGTAGC
TGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTAGGGATAGTTG
TAAGCCACCATGTGGTTGTTGGGATTTGAACTCAAGAGCAGGTAAGAGCA
AGGTAAGAGCAGTCGGGTGCTCTTACCTGCTGAGCCATCTAACTAGCTCC
ATCCCAAATCATCTTATAGATAAGCCTCTGGGCAAACCTATGATAGATTA
CCTAGATCTTAATGGGGGCAGCACTACTGAATAAAGAGAAATCAGGTTGA
GAGCAAGCATTCTCATTTCCTGACTGTGGGTGCCACTAGATAGAGTTACA
CCAGGGTTTTAAGGAAACTTGGGCATTATACCTGCTCAGCACCTTGATTT
CCCTTTATCACACAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_f22.b1 MSMg01no069_f22.b1 CHROMAT_FILE:
MSMg01no069_f22.b1 PHD_FILE: MSMg01no069_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:06 2005
         (529 letters)



>mm_chr15_44408898_44409826
          Length = 929

 Score =  832 bits (430), Expect = 0.0
 Identities = 509/540 (94%), Gaps = 14/540 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtaagcatagaacacatgtggctcaatcattcctatcaccatagatagtgtccaacaa 60
           ||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct: 812 aagtaagcatagaacacatgtggttcaatcattcccatcaccatagctagtgtccaacaa 753

                                                                       
Query: 61  tagtaaagaggcatc--------aagaaggaagtaaggccatttttacctaaccagcatg 112
           |||||||||||||||        |||||||||||||||||||||||||||| ||||||||
Sbjct: 752 tagtaaagaggcatcaaattctaaagaaggaagtaaggccatttttacctacccagcatg 693

                                                                       
Query: 113 catacattcctataaactggtagacaatgaaaaagccgaggggacaagagctaaagaatg 172
           |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct: 692 catacattcctataaactggtagacaatgaaaaaacccagggaacaagagctaaagaatg 633

                                                                       
Query: 173 actcatttttaacaaagtcccgattgcaaatccactgattgtgaactaataaattgttca 232
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 632 actca-ttttaacaaagtcccgattgcaaatccactgattgtgaactgataaattgttca 574

                                                                       
Query: 233 aaactgcaa-gtctttaggataatttgtaatgtagcaagaactaactggtgcattgtttt 291
           |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaactgtaaggt-tttaggataatttgtaatgtagcaagaactaactggtgcattgtttt 515

                                                                       
Query: 292 cattttggcctctttgtttacattatatacactgtgggttacaataaaagacatttttaa 351
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 514 cattttggcctctttgtttacattatatactctgtgggttaca-taaaagacatttttaa 456

                                                                       
Query: 352 aaatcatacttaaaa-tctaataatgcaaaggctatttccaaaatccttaagtaagtttt 410
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaatcacacttaaaaatctaataatgcaaaggctatttccaaaatccttaagtaagtttt 396

                                                                       
Query: 411 tctactagccttaaaa-gtatattttgtcttaagaaattctttaaaagaataataacata 469
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 395 tctactagccttaaaaagtatattttgtcttaagaaattctttgaaagaataatatcata 336

                                                                       
Query: 470 gatgtgtagaaataaaatgcagcggtagacactgaatgtatcttccctagatctttatta 529
           |||||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||
Sbjct: 335 gatgtgtagaaataaaatgcagtggcagacactgaatgtgtctttcctagatctttatta 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)