BAC Information

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BAC

Clone NameMSMg01-070I23
Chromosome15 (Build37)
Map Location 75,583,014 - 75,583,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa
Downstream geneZc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070I23.T7 (MSMg01no070_i23.b1)MSMg01-070I23.TJ (MSMg01no070_i23.g1)
ACCAG294552AG294553
length660677
length of high quality
(start - end)		360 (36 - 395)248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no070_i23.b1 PHD_FILE: MSMg01no070_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:40 2005CHROMAT_FILE: MSMg01no070_i23.g1 PHD_FILE: MSMg01no070_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCCTGCTGCA
TTGCCTCTGTCCAGCAGGCCCTGACACTGGCGGCTGCTCATATATACCAG
TGTGGCATGTAGTTCCTTGGGACTTGGAGTGTGTTGGGGATTAGCTGCAC
GTTGATCTGGTGAGGTGGAGCCCCTCTAGACAAGGCAGCATGGTCTATAG
GCTAAGTGCTGGGCACAAAGGTGAGTTACAGCCAGAAGAGCAGCACCTAC
CATGGCTGTCTCTGGCTATGTCAGTACTTGGTGAGTATAGGTACCCACTG
GTCTACTCTGGACTCCTACCTACAGTGATGCTCACTAGGGAAGTGAGCAC
AAAGGGTGAGGGTGTGCTCGCTTGGAACCTATCTATGAAACTAGAATGCT
CAAGGACCCTAGCCTGAGAAGTCAGCCGTGTGTGTCCCTCTGCCAGCCTG
TGGATCATCAGCCATAGGGCAAGAGGTGGGAGCATGTAACAGGTGAGTGG
TACCCTGCAGCTCTGCTTATTTCTATACCCCCTACCCAGTAAGATTAGGG
AGACCAGAAACACTGATCCTCCCCAGAGCATGATATTGATTATGCCGGTA
TGACCCTGTTAGGCCCAATGGCACTGGATGGTTGCGGTATAAACTGCACT
TCATTTTGCG

NCGATGAAGTGGTAGGCCTGGAGAGCGCCTGGTTGCCTAACTGGGGGNGA
XXXXXXXXXXXXXXXXXXXXXXXXCAGACATTGGAACAAGAAGCTGTAAT
GTTGAAGTTGCCTTGGAGATGCCAAGATGTTAGAGATGCCAGAGCCATGA
GATACTTGTCAAGGAAAGTTGCTAATAGGGAGGAGAACCAATCTAATAGA
ATGAATTGTGTTATAGTCAACAGAGCTGAAAGAAGTTTTACATCAACCAT
GGAGATTCAGAGTTTAGAGTTTGCCCAGCTACTTTTGGAACAATAATGTA
TATCCTGTGCCATGATATGTTTTTTATATGTGATTTGCTTATTGATTATA
ATTTTTAGGGATTGCAGTTAACAGATTGCATGACTCTCAGAAGGGACTTT
GAACTTTGGATTATAAAAAAAGATATATTATGTAAACAATGTTCTGCCTT
CATGTATGCCTTCAGGCCAGAAGAGAGTACCAGATCTCATTACAGATGGT
TGTGAGCAACCATGAGGTTGCTAGAAATTGAACTCAGAATCTCTAATAAT
AGGAAAGCCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCTGAACTTT
GGACTTTTAAACTTTGTTGAAATGGGGATAAAATAAGGAGAGTTTTGACT
TTGGACTGGGTAATTCCTGTAATGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_i23.b1 MSMg01no070_i23.b1 CHROMAT_FILE:
MSMg01no070_i23.b1 PHD_FILE: MSMg01no070_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:40 2005
         (360 letters)



>mm_chr15_75582814_75583573
          Length = 760

 Score =  665 bits (344), Expect = 0.0
 Identities = 356/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaattcctgctgcattgcctctgtccagcaggccctgacactggcggctgctcatatat 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcctgctgcattggctctgtccagcaggccctgacactggcggctgctcatatat 260

                                                                       
Query: 61  accagtgtggcatgtagttccttgggacttggagtgtgttggggattagctgcacgttga 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 261 accagtgtggcatgtagttccttgggacttggagtgtgttagggattagctgcacattga 320

                                                                       
Query: 121 tctggtgaggtggagcccctctagacaaggcagcatggtctataggctaagtgctgggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtgaggtggagcccctctagacaaggcagcatggtctataggctaagtgctgggca 380

                                                                       
Query: 181 caaaggtgagttacagccagaagagcagcacctaccatggctgtctctggctatgtcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaggtgagttacagccagaagagcagcacctaccatggctgtctctggctatgtcagt 440

                                                                       
Query: 241 acttggtgagtataggtacccactggtctactctggactcctacctacagtgatgctcac 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 acttggtgagtataggtacccactggtctactcaggactcctacctacagtgatgctcac 500

                                                                       
Query: 301 tagggaagtgagcacaaagggtgagggtgtgctcgcttggaacctatctatgaaactaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagggaagtgagcacaaagggtgagggtgtgctcgcttggaacctatctatgaaactaga 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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