Query= MSMg01no070_n19.b1 MSMg01no070_n19.b1 CHROMAT_FILE:
MSMg01no070_n19.b1 PHD_FILE: MSMg01no070_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:04 2005
(570 letters)
>mm_chr15_27584647_27585618
Length = 972
Score = 1079 bits (558), Expect = 0.0
Identities = 568/572 (99%), Gaps = 2/572 (0%)
Strand = Plus / Minus
Query: 1 acttcgccgatgataagtgatgacgttattccgtaagttgtcatactttatcatgtgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acttcgccgatgataagtgatgacgttattccgtaagttgtcatactttatcatgtgtat 602
Query: 61 gcaatcactcaaaaagttttggatgagaaaatgatcccaattagaggaaacaagatggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcaatcactcaaaaagttttggatgagaaaatgatcccaattagaggaaacaagatggtt 542
Query: 121 gtttaagtggaaacctggcatatagttgttaaatccatgaatgagctagtatagcagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtttaagtggaaacctggcatatagttgttaaatccatgaatgagctagtatagcagata 482
Query: 181 ttgtgtttcctaggaaggtgctcaaaaaatgtacatagtaagtcagccagggcttccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgtgtttcctaggaaggtgctcaaaaaatgtacatagtaagtcagccagggcttccatg 422
Query: 241 tcatgtggaaattctaagaagaacaaaactataataaaatcatcatttttggaaaacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcatgtggaaattctaagaagaacaaaactataataaaatcatcatttttggaaaacttc 362
Query: 301 aacaggtttcagttagccagtcacatgcctgttcggagaggatggctgtggcccgggacc 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 361 aacaggtttcagttagccagtcacatgcctgttccgagaggatggctgtggcccgggacc 302
Query: 361 tgtccgtggtgctgaaaaggcgatgccacagatgttcaaggatgccctgaaac--tgaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 tgtccgtggtgctgaaaaggcgatgccacagatgttcaaggatgccctgaaactgtgaac 242
Query: 419 caggttttcttccaggtttctgtttccaatggcagcgctagtaataaaaattattatttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggttttcttccaggtttctgtttccaatggcagcgctagtaataaaaattattatttt 182
Query: 479 atagatattgcttcttctttcttaagaattgggatttaagaatggcttgctttagtagta 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 atagatattgcttcttctttcttaagaattgggatttaagaatggcttgctttagtggta 122
Query: 539 gcttgcatttttgtgaaatgtataattcagta 570
||||||||||||||||||||||||||||||||
Sbjct: 121 gcttgcatttttgtgaaatgtataattcagta 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 972
Length adjustment: 10
Effective length of query: 560
Effective length of database: 962
Effective search space: 538720
Effective search space used: 538720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_n19.g1 MSMg01no070_n19.g1 CHROMAT_FILE:
MSMg01no070_n19.g1 PHD_FILE: MSMg01no070_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:04 2005
(471 letters)
>mm_chr15_27441009_27441879
Length = 871
Score = 723 bits (374), Expect = 0.0
Identities = 441/476 (92%), Gaps = 25/476 (5%)
Strand = Plus / Plus
Query: 1 ttcttatgttttgacttaatttggtcagagggaaatgttacacttcttcagaagctcaca 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 216 ttcttatgttttgacttaatttggtcagatggaaatgttacacttcttcagaagctcaca 275
Query: 61 tcatcttaattcacatcatggtgcgtggcttgtatgcagtgggtcacccgctggtgttct 120
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ----------tcac-----ggtgcgtggcttgtatgcagtgggtcacccgctggtgttct 320
Query: 121 gtgctgagttgcagtggttggttagaggtgaggtttaatgcatggttact-agctttcta 179
|||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||
Sbjct: 321 gtgctgagttgcagtggttggttagaggtgaggtttaatgcacggctactca-ctttcta 379
Query: 180 aagtcactgcccctgtctgtggaaagcggctccctggtaggcatacccttcccgtagcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 380 aagtcactgcccctgtctgtggaaagcggctccctggtaggcatacccttcccatagcaa 439
Query: 240 aggtgactcttgactgccctggaaccccacagagtcattttcattgtggaaaagctctcc 299
||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 aggtgacacaagactgccctggaaccccacagagtcattttcaatgtggaaaagctctcc 499
Query: 300 ttggatcgttgctgggtctcactgggacagctcacttcttcagaacccc----tttcctg 355
|||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 500 ttggatcgttgctgggcctcactgggacagctcacttcttcagaa----gggttttcctg 555
Query: 356 tcctggtgatagcagtgtggtcccaagcaggcatggatgcatggtaagtgtaccaggcga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcctggtgatagcagtgtggtcccaagcaggcatggatgcatggtaagtgtaccaggcga 615
Query: 416 tttcctgtccagttgtctttgcttactgtgcagttgccttacaggtcacacagacg 471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttcctgcccagttgtctttgcttactgtgcagttgccttacaggtcacacagacg 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
