BAC Information

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BAC

Clone NameMSMg01-071D22
Chromosome15 (Build37)
Map Location 50,440,569 - 50,440,959
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644, LOC100039662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071D22.T7 (MSMg01no071_d22.b1)MSMg01-071D22.TJ (MSMg01no071_d22.g1)
ACCAG295076AG295077
length702710
length of high quality
(start - end)
---392 (67 - 458)
definitionCHROMAT_FILE: MSMg01no071_d22.b1 PHD_FILE: MSMg01no071_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:34 2005CHROMAT_FILE: MSMg01no071_d22.g1 PHD_FILE: MSMg01no071_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCANANGANNNNATTTTCGAACCGCCCGGAANNNNNCNCNGT
GGCGNCANGCGAGGGGGNNGNAAGCCAACCNNAAGAGAGANGGGNACCCT
TTGACCCACAGAGAAGGAAACAAACAAACCAAGGCAAGAGGCAACCAAAC
GGAGACCGCACCGGGGGCAGGGAGGGGCACGCGCCCGCCACCCCNGACAA
CAGCAGGGCCCCGGGCGGAGCGGACCCGAGTTTTTGCACCCAGCGCGGCC
ACAGACCCCGCAAGCCCGCACGCGACGCACCCGCGAACGGCCGGGTTTTG
TGTTTTTGGAGAACACCAAGCCCACGAGCNACCAAGAAAGCCCCCCCCCC
CCCACCGCAAGGAGGCCGAAACCGCGAAAGGAGGGAGAGGCGAAAGACAA
CCGCCAGAGGGCCGCGGACCAAGAGCGCACCAGCGGACAAGGCCAGACCG
CACCAACCGCAACCGCCCCCGGCAGCCGCACAACGCAGAGACCCAGAGGG
GAGCAGAGAAAGCCACACAGCAACCGCGAAGAAGGAGAAAAGGGCGCCCA
GAACCAGAAAACCCACGGGGCACACACCCACCGGAGAAAAAAGCGCGCCC
AGCAGGAACCCGAGCCAGAAAGGGCCCGGACCGACGCCAATTTTTTTTTT
TTTTGGCGAGAACGGGGCGGTGACAGTGGAACATAAGCCACACTTGGCCC
CA
TGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTGAAATTGCTATCATCCAGAAGATACGATATG
ACTGTAAGTCAGAAGACATGGATCTGAGAAAAAGCCAGCGTACACATTTA
TCAACTAAAGTTCTCCTTAGTAGAGAAGGTGTTTTAAATGTTAGGGCAAT
AGCTTTCAAGGGAATTCTAGTAAAAATACACTGAAGCAACGAAGGGGCTT
GATATGATCTGAGCTCAAATAGATTGGGAATTGCAACTCCAGAGGAAATG
TATAGAGGAATGGACCCTTTTTTTTATTGTTGTTGTTGTTTGCTCTTTGG
TGTCAGAGAATACATGGGCCAAACAAGAAACATTTTCTTTATATCCATCC
ACACCTACATCTCCAGCACATATATTCTGAGCCATAATGGAGGAGCCAGC
TCCAGCTGTAAGGAACACAGTTTGGCTCCTGTTGAAAGAGCTGTTATTGT
TTTTGTTGTTAAAGTACAGCTCCATATAATTTATGACTGGTAAATATTCT
GAAGAATATACAGGGTATTTTTATAGGGCATTGATCCCAATTGAATTAGG
GCATAATACATAACATGAAAGACAAACGATATGGTTAAAAATAAGAAATC
CATTTTGTCCAAAAGCCCAGTAAAATACCAATACTATATACAAATGTTAT
TGCATGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_d22.g1 MSMg01no071_d22.g1 CHROMAT_FILE:
MSMg01no071_d22.g1 PHD_FILE: MSMg01no071_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:35 2005
         (392 letters)



>mm_chr15_50440369_50441159
          Length = 791

 Score =  729 bits (377), Expect = 0.0
 Identities = 389/393 (98%), Gaps = 3/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaaattgctatcatccagaagatacgatatgactgtaagtcagaagacatggatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaattgctatcatccagaagatacgatatgactgtaagtcagaagacatggatctg 260

                                                                       
Query: 61  agaaaaagccagcgtacacatttatcaactaaagttctccttagtagagaaggtgtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaaagccagcgtacacatttatcaactaaagttctccttagtagagaaggtgtttta 320

                                                                       
Query: 121 aatgttagggcaatagctttcaagggaattctagtaaaaatacactgaagcaacgaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgttagggcaatagctttcaagggaattctagtaaaaatacactgaagcaacgaaggg 380

                                                                       
Query: 181 gcttgatatgatctgagctcaaatagattgggaattgcaactccagaggaaatgtataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgatatgatctgagctcaaatagattgggaattgcaactccagaggaaatgtataga 440

                                                                       
Query: 241 ggaatggacccttttttttattgttgttgttgtttgctctttggtgtcagagaatacatg 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatggacccttttttt-attgttgttgttgtttgctctttggtgtcagagaatacatg 499

                                                                       
Query: 301 ggccaaacaagaaacattttctttatatccatccacacctacatctccagcacatatatt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 ggccaaacaagaaacattttctttagatccatccacacctacatctccagcacatatatt 559

                                            
Query: 361 ctgagccataatgga-ggagccagctccagctg 392
           ||||||||||| ||| |||||||||||||||||
Sbjct: 560 ctgagccataa-ggaaggagccagctccagctg 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space:   299506
Effective search space used:   299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)